Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5236

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5234 and Pf6N2E2_5235 are separated by 2 nucleotidesPf6N2E2_5235 and Pf6N2E2_5236 are separated by 62 nucleotidesPf6N2E2_5236 and Pf6N2E2_5237 overlap by 21 nucleotidesPf6N2E2_5237 and Pf6N2E2_5238 are separated by 3 nucleotides Pf6N2E2_5234 - Uracil permease, at 6,032,089 to 6,033,363 _5234 Pf6N2E2_5235 - Uracil phosphoribosyltransferase (EC 2.4.2.9), at 6,033,366 to 6,034,004 _5235 Pf6N2E2_5236 - hypothetical protein, at 6,034,067 to 6,034,189 _5236 Pf6N2E2_5237 - Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8), at 6,034,169 to 6,034,726 _5237 Pf6N2E2_5238 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 6,034,730 to 6,035,203 _5238 Position (kb) 6034 6035Strain fitness (log2 ratio) -2 -1 0 1 2at 6033.074 kb on + strand, within Pf6N2E2_5234at 6033.075 kb on - strand, within Pf6N2E2_5234at 6033.075 kb on - strand, within Pf6N2E2_5234at 6033.249 kb on + strandat 6033.250 kb on - strandat 6033.280 kb on + strandat 6033.280 kb on + strandat 6033.430 kb on + strand, within Pf6N2E2_5235at 6033.430 kb on + strand, within Pf6N2E2_5235at 6033.430 kb on + strand, within Pf6N2E2_5235at 6033.469 kb on + strand, within Pf6N2E2_5235at 6033.469 kb on + strand, within Pf6N2E2_5235at 6033.469 kb on + strand, within Pf6N2E2_5235at 6033.469 kb on + strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.470 kb on - strand, within Pf6N2E2_5235at 6033.667 kb on + strand, within Pf6N2E2_5235at 6033.667 kb on + strand, within Pf6N2E2_5235at 6033.668 kb on - strand, within Pf6N2E2_5235at 6033.668 kb on - strand, within Pf6N2E2_5235at 6033.851 kb on - strand, within Pf6N2E2_5235at 6033.851 kb on - strand, within Pf6N2E2_5235at 6033.851 kb on - strand, within Pf6N2E2_5235at 6033.851 kb on - strand, within Pf6N2E2_5235at 6033.851 kb on - strand, within Pf6N2E2_5235at 6033.883 kb on + strand, within Pf6N2E2_5235at 6033.883 kb on + strand, within Pf6N2E2_5235at 6033.884 kb on - strand, within Pf6N2E2_5235at 6033.884 kb on - strand, within Pf6N2E2_5235at 6033.884 kb on - strand, within Pf6N2E2_5235at 6033.884 kb on - strand, within Pf6N2E2_5235at 6033.884 kb on - strand, within Pf6N2E2_5235at 6034.041 kb on - strandat 6034.045 kb on + strandat 6034.046 kb on - strandat 6034.050 kb on + strandat 6034.050 kb on + strandat 6034.050 kb on + strandat 6034.051 kb on - strandat 6034.051 kb on - strandat 6034.071 kb on - strandat 6034.077 kb on + strandat 6034.077 kb on + strandat 6034.078 kb on - strandat 6034.088 kb on - strand, within Pf6N2E2_5236at 6034.088 kb on - strand, within Pf6N2E2_5236at 6034.125 kb on - strand, within Pf6N2E2_5236at 6034.125 kb on - strand, within Pf6N2E2_5236at 6034.224 kb on - strandat 6034.383 kb on - strand, within Pf6N2E2_5237at 6034.650 kb on - strand, within Pf6N2E2_5237at 6034.650 kb on - strand, within Pf6N2E2_5237at 6034.673 kb on + strandat 6034.673 kb on + strandat 6034.673 kb on + strandat 6034.673 kb on + strandat 6034.674 kb on - strandat 6034.674 kb on - strandat 6034.674 kb on - strandat 6034.724 kb on + strandat 6034.724 kb on + strandat 6034.724 kb on + strandat 6034.724 kb on + strandat 6034.725 kb on - strandat 6034.725 kb on - strandat 6034.816 kb on + strand, within Pf6N2E2_5238at 6034.816 kb on + strand, within Pf6N2E2_5238at 6034.817 kb on - strand, within Pf6N2E2_5238at 6034.817 kb on - strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.877 kb on + strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6034.878 kb on - strand, within Pf6N2E2_5238at 6035.042 kb on + strand, within Pf6N2E2_5238

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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6,033,074 + Pf6N2E2_5234 0.77 -0.2
6,033,075 - Pf6N2E2_5234 0.77 -0.5
6,033,075 - Pf6N2E2_5234 0.77 +0.0
6,033,249 + +0.1
6,033,250 - +0.6
6,033,280 + -1.1
6,033,280 + -0.6
6,033,430 + Pf6N2E2_5235 0.10 +0.6
6,033,430 + Pf6N2E2_5235 0.10 -0.4
6,033,430 + Pf6N2E2_5235 0.10 -0.2
6,033,469 + Pf6N2E2_5235 0.16 +0.2
6,033,469 + Pf6N2E2_5235 0.16 +0.3
6,033,469 + Pf6N2E2_5235 0.16 -0.0
6,033,469 + Pf6N2E2_5235 0.16 -0.2
6,033,470 - Pf6N2E2_5235 0.16 -1.4
6,033,470 - Pf6N2E2_5235 0.16 -1.1
6,033,470 - Pf6N2E2_5235 0.16 -0.0
6,033,470 - Pf6N2E2_5235 0.16 -0.2
6,033,470 - Pf6N2E2_5235 0.16 -0.1
6,033,470 - Pf6N2E2_5235 0.16 -0.2
6,033,470 - Pf6N2E2_5235 0.16 -1.1
6,033,470 - Pf6N2E2_5235 0.16 -0.1
6,033,667 + Pf6N2E2_5235 0.47 -1.0
6,033,667 + Pf6N2E2_5235 0.47 +0.8
6,033,668 - Pf6N2E2_5235 0.47 -0.8
6,033,668 - Pf6N2E2_5235 0.47 -0.7
6,033,851 - Pf6N2E2_5235 0.76 +0.8
6,033,851 - Pf6N2E2_5235 0.76 -0.4
6,033,851 - Pf6N2E2_5235 0.76 +0.2
6,033,851 - Pf6N2E2_5235 0.76 +1.0
6,033,851 - Pf6N2E2_5235 0.76 +0.6
6,033,883 + Pf6N2E2_5235 0.81 -0.2
6,033,883 + Pf6N2E2_5235 0.81 +0.2
6,033,884 - Pf6N2E2_5235 0.81 -2.2
6,033,884 - Pf6N2E2_5235 0.81 +0.8
6,033,884 - Pf6N2E2_5235 0.81 -0.3
6,033,884 - Pf6N2E2_5235 0.81 -0.4
6,033,884 - Pf6N2E2_5235 0.81 +0.1
6,034,041 - +0.8
6,034,045 + +2.1
6,034,046 - -0.1
6,034,050 + +1.8
6,034,050 + +0.7
6,034,050 + +0.9
6,034,051 - -0.3
6,034,051 - +0.2
6,034,071 - -1.4
6,034,077 + +0.4
6,034,077 + +0.4
6,034,078 - +0.2
6,034,088 - Pf6N2E2_5236 0.17 +0.1
6,034,088 - Pf6N2E2_5236 0.17 -0.5
6,034,125 - Pf6N2E2_5236 0.47 -1.3
6,034,125 - Pf6N2E2_5236 0.47 -0.5
6,034,224 - -0.0
6,034,383 - Pf6N2E2_5237 0.38 -0.7
6,034,650 - Pf6N2E2_5237 0.86 +0.8
6,034,650 - Pf6N2E2_5237 0.86 -0.2
6,034,673 + +0.5
6,034,673 + -0.8
6,034,673 + -0.7
6,034,673 + +0.2
6,034,674 - -1.0
6,034,674 - -0.2
6,034,674 - -0.0
6,034,724 + +0.7
6,034,724 + +0.1
6,034,724 + -0.8
6,034,724 + +0.4
6,034,725 - -0.1
6,034,725 - +1.2
6,034,816 + Pf6N2E2_5238 0.18 -1.0
6,034,816 + Pf6N2E2_5238 0.18 +0.2
6,034,817 - Pf6N2E2_5238 0.18 +0.7
6,034,817 - Pf6N2E2_5238 0.18 +1.5
6,034,877 + Pf6N2E2_5238 0.31 +1.0
6,034,877 + Pf6N2E2_5238 0.31 +0.1
6,034,877 + Pf6N2E2_5238 0.31 -0.3
6,034,877 + Pf6N2E2_5238 0.31 +0.6
6,034,878 - Pf6N2E2_5238 0.31 +1.1
6,034,878 - Pf6N2E2_5238 0.31 -0.8
6,034,878 - Pf6N2E2_5238 0.31 +0.5
6,034,878 - Pf6N2E2_5238 0.31 -0.5
6,035,042 + Pf6N2E2_5238 0.66 +0.1

Or see this region's nucleotide sequence