Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5153

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5152 and Pf6N2E2_5153 overlap by 4 nucleotidesPf6N2E2_5153 and Pf6N2E2_5154 are separated by 275 nucleotidesPf6N2E2_5154 and Pf6N2E2_5155 are separated by 3 nucleotides Pf6N2E2_5152 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 5,939,268 to 5,940,128 _5152 Pf6N2E2_5153 - 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11), at 5,940,125 to 5,940,925 _5153 Pf6N2E2_5154 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3), at 5,941,201 to 5,941,686 _5154 Pf6N2E2_5155 - Poly(A) polymerase (EC 2.7.7.19), at 5,941,690 to 5,943,087 _5155 Position (kb) 5940 5941Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5939.147 kb on + strandat 5939.147 kb on + strandat 5939.148 kb on - strandat 5939.269 kb on + strandat 5939.270 kb on - strandat 5939.270 kb on - strandat 5939.516 kb on - strand, within Pf6N2E2_5152at 5940.123 kb on - strandat 5940.123 kb on - strandat 5940.183 kb on + strandat 5940.183 kb on + strandat 5940.184 kb on - strandat 5940.184 kb on - strandat 5940.184 kb on - strandat 5940.184 kb on - strandat 5940.206 kb on - strand, within Pf6N2E2_5153at 5940.291 kb on - strand, within Pf6N2E2_5153at 5940.475 kb on + strand, within Pf6N2E2_5153at 5940.475 kb on + strand, within Pf6N2E2_5153at 5940.476 kb on - strand, within Pf6N2E2_5153at 5940.476 kb on - strand, within Pf6N2E2_5153at 5940.476 kb on - strand, within Pf6N2E2_5153at 5940.477 kb on + strand, within Pf6N2E2_5153at 5940.477 kb on + strand, within Pf6N2E2_5153at 5940.477 kb on + strand, within Pf6N2E2_5153at 5940.477 kb on + strand, within Pf6N2E2_5153at 5940.478 kb on - strand, within Pf6N2E2_5153at 5940.478 kb on - strand, within Pf6N2E2_5153at 5940.478 kb on - strand, within Pf6N2E2_5153at 5940.478 kb on - strand, within Pf6N2E2_5153at 5940.657 kb on + strand, within Pf6N2E2_5153at 5940.657 kb on + strand, within Pf6N2E2_5153at 5940.658 kb on - strand, within Pf6N2E2_5153at 5940.658 kb on - strand, within Pf6N2E2_5153at 5940.726 kb on + strand, within Pf6N2E2_5153at 5940.727 kb on - strand, within Pf6N2E2_5153at 5940.853 kb on - strandat 5940.853 kb on - strandat 5940.853 kb on - strandat 5940.914 kb on - strandat 5940.916 kb on + strandat 5940.916 kb on + strandat 5940.916 kb on + strandat 5940.916 kb on + strandat 5940.917 kb on - strandat 5940.917 kb on - strandat 5940.917 kb on - strandat 5940.917 kb on - strandat 5940.940 kb on + strandat 5940.941 kb on - strandat 5940.955 kb on + strandat 5940.956 kb on - strandat 5940.965 kb on - strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.985 kb on + strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.986 kb on - strandat 5940.988 kb on - strandat 5941.002 kb on + strandat 5941.002 kb on + strandat 5941.002 kb on + strandat 5941.002 kb on + strandat 5941.003 kb on - strandat 5941.003 kb on - strandat 5941.003 kb on - strandat 5941.003 kb on - strandat 5941.017 kb on + strandat 5941.018 kb on - strandat 5941.018 kb on - strandat 5941.018 kb on - strandat 5941.069 kb on - strandat 5941.069 kb on - strandat 5941.069 kb on - strandat 5941.070 kb on + strandat 5941.070 kb on + strandat 5941.070 kb on + strandat 5941.071 kb on - strandat 5941.071 kb on - strandat 5941.071 kb on - strandat 5941.071 kb on - strandat 5941.130 kb on + strandat 5941.206 kb on + strandat 5941.674 kb on - strandat 5941.674 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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5,939,147 + -0.7
5,939,147 + +0.5
5,939,148 - -0.4
5,939,269 + +1.1
5,939,270 - +0.8
5,939,270 - -1.1
5,939,516 - Pf6N2E2_5152 0.29 -3.5
5,940,123 - -0.7
5,940,123 - -1.2
5,940,183 + -1.0
5,940,183 + -2.5
5,940,184 - +0.2
5,940,184 - +0.5
5,940,184 - -0.3
5,940,184 - +1.1
5,940,206 - Pf6N2E2_5153 0.10 -0.4
5,940,291 - Pf6N2E2_5153 0.21 +0.7
5,940,475 + Pf6N2E2_5153 0.44 -0.2
5,940,475 + Pf6N2E2_5153 0.44 -2.3
5,940,476 - Pf6N2E2_5153 0.44 -0.7
5,940,476 - Pf6N2E2_5153 0.44 +0.6
5,940,476 - Pf6N2E2_5153 0.44 +0.2
5,940,477 + Pf6N2E2_5153 0.44 -3.5
5,940,477 + Pf6N2E2_5153 0.44 -1.7
5,940,477 + Pf6N2E2_5153 0.44 -0.3
5,940,477 + Pf6N2E2_5153 0.44 -0.1
5,940,478 - Pf6N2E2_5153 0.44 -0.7
5,940,478 - Pf6N2E2_5153 0.44 -1.2
5,940,478 - Pf6N2E2_5153 0.44 +0.4
5,940,478 - Pf6N2E2_5153 0.44 -2.2
5,940,657 + Pf6N2E2_5153 0.66 -0.9
5,940,657 + Pf6N2E2_5153 0.66 -0.8
5,940,658 - Pf6N2E2_5153 0.67 -0.2
5,940,658 - Pf6N2E2_5153 0.67 -0.5
5,940,726 + Pf6N2E2_5153 0.75 -0.7
5,940,727 - Pf6N2E2_5153 0.75 -0.7
5,940,853 - -0.3
5,940,853 - +0.5
5,940,853 - -0.7
5,940,914 - -0.3
5,940,916 + -2.1
5,940,916 + -1.7
5,940,916 + -2.3
5,940,916 + -3.1
5,940,917 - +1.2
5,940,917 - +0.1
5,940,917 - +0.1
5,940,917 - -0.0
5,940,940 + -0.7
5,940,941 - -0.5
5,940,955 + +0.5
5,940,956 - -0.2
5,940,965 - -0.9
5,940,985 + +0.3
5,940,985 + -2.4
5,940,985 + -1.7
5,940,985 + -0.8
5,940,985 + -1.5
5,940,985 + -0.2
5,940,985 + -0.3
5,940,986 - +0.0
5,940,986 - -0.5
5,940,986 - +1.0
5,940,986 - -1.0
5,940,986 - -0.4
5,940,986 - +0.3
5,940,986 - +0.9
5,940,986 - -0.9
5,940,986 - -0.8
5,940,986 - +0.2
5,940,986 - -0.6
5,940,986 - +0.6
5,940,988 - +0.2
5,941,002 + -0.3
5,941,002 + +0.7
5,941,002 + -0.5
5,941,002 + -3.1
5,941,003 - -1.1
5,941,003 - +0.4
5,941,003 - +0.3
5,941,003 - -0.0
5,941,017 + -0.9
5,941,018 - -0.6
5,941,018 - -0.4
5,941,018 - +2.3
5,941,069 - -0.9
5,941,069 - +0.1
5,941,069 - -0.2
5,941,070 + -1.6
5,941,070 + +0.6
5,941,070 + -0.4
5,941,071 - +0.0
5,941,071 - -1.7
5,941,071 - +0.3
5,941,071 - +0.1
5,941,130 + +0.7
5,941,206 + +0.4
5,941,674 - -0.3
5,941,674 - +0.8

Or see this region's nucleotide sequence