Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5076

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5074 and Pf6N2E2_5075 are separated by 115 nucleotidesPf6N2E2_5075 and Pf6N2E2_5076 are separated by 43 nucleotidesPf6N2E2_5076 and Pf6N2E2_5077 are separated by 192 nucleotidesPf6N2E2_5077 and Pf6N2E2_5078 are separated by 157 nucleotides Pf6N2E2_5074 - Catalase (EC 1.11.1.6), at 5,849,985 to 5,851,526 _5074 Pf6N2E2_5075 - FOG: Ankyrin repeat, at 5,851,642 to 5,852,193 _5075 Pf6N2E2_5076 - DNA repair protein RadA, at 5,852,237 to 5,853,604 _5076 Pf6N2E2_5077 - hypothetical protein, at 5,853,797 to 5,854,153 _5077 Pf6N2E2_5078 - Carbon starvation protein A, at 5,854,311 to 5,856,377 _5078 Position (kb) 5852 5853 5854Strain fitness (log2 ratio) -2 -1 0 1 2at 5851.245 kb on + strand, within Pf6N2E2_5074at 5851.245 kb on + strand, within Pf6N2E2_5074at 5851.245 kb on + strand, within Pf6N2E2_5074at 5851.246 kb on - strand, within Pf6N2E2_5074at 5851.326 kb on + strand, within Pf6N2E2_5074at 5851.432 kb on - strandat 5851.432 kb on - strandat 5851.450 kb on - strandat 5851.625 kb on - strandat 5851.625 kb on - strandat 5851.661 kb on + strandat 5851.691 kb on + strandat 5851.691 kb on + strandat 5851.730 kb on + strand, within Pf6N2E2_5075at 5851.731 kb on - strand, within Pf6N2E2_5075at 5851.750 kb on + strand, within Pf6N2E2_5075at 5851.750 kb on + strand, within Pf6N2E2_5075at 5851.753 kb on + strand, within Pf6N2E2_5075at 5851.753 kb on + strand, within Pf6N2E2_5075at 5851.754 kb on - strand, within Pf6N2E2_5075at 5851.800 kb on + strand, within Pf6N2E2_5075at 5851.801 kb on - strand, within Pf6N2E2_5075at 5851.813 kb on + strand, within Pf6N2E2_5075at 5851.843 kb on + strand, within Pf6N2E2_5075at 5851.843 kb on + strand, within Pf6N2E2_5075at 5851.868 kb on - strand, within Pf6N2E2_5075at 5851.868 kb on - strand, within Pf6N2E2_5075at 5851.868 kb on - strand, within Pf6N2E2_5075at 5851.868 kb on - strand, within Pf6N2E2_5075at 5851.942 kb on - strand, within Pf6N2E2_5075at 5851.942 kb on - strand, within Pf6N2E2_5075at 5852.056 kb on + strand, within Pf6N2E2_5075at 5852.056 kb on + strand, within Pf6N2E2_5075at 5852.056 kb on + strand, within Pf6N2E2_5075at 5852.056 kb on + strand, within Pf6N2E2_5075at 5852.056 kb on + strand, within Pf6N2E2_5075at 5852.056 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.057 kb on - strand, within Pf6N2E2_5075at 5852.258 kb on + strandat 5852.259 kb on - strandat 5852.259 kb on - strandat 5852.259 kb on - strandat 5852.259 kb on - strandat 5852.502 kb on + strand, within Pf6N2E2_5076at 5852.503 kb on - strand, within Pf6N2E2_5076at 5852.603 kb on + strand, within Pf6N2E2_5076at 5852.604 kb on - strand, within Pf6N2E2_5076at 5852.604 kb on - strand, within Pf6N2E2_5076at 5852.604 kb on - strand, within Pf6N2E2_5076at 5852.877 kb on + strand, within Pf6N2E2_5076at 5852.878 kb on - strand, within Pf6N2E2_5076at 5852.948 kb on + strand, within Pf6N2E2_5076at 5852.948 kb on + strand, within Pf6N2E2_5076at 5853.327 kb on + strand, within Pf6N2E2_5076at 5853.328 kb on - strand, within Pf6N2E2_5076at 5853.608 kb on + strandat 5853.645 kb on - strandat 5853.645 kb on - strandat 5853.645 kb on - strandat 5853.645 kb on - strandat 5853.645 kb on - strandat 5853.663 kb on + strandat 5853.663 kb on + strandat 5853.664 kb on - strandat 5853.690 kb on + strandat 5853.690 kb on + strandat 5853.690 kb on + strandat 5853.690 kb on + strandat 5853.691 kb on - strandat 5853.697 kb on + strandat 5853.764 kb on + strandat 5853.765 kb on - strandat 5853.765 kb on - strandat 5853.873 kb on - strand, within Pf6N2E2_5077at 5853.873 kb on - strand, within Pf6N2E2_5077at 5853.873 kb on - strand, within Pf6N2E2_5077at 5853.873 kb on - strand, within Pf6N2E2_5077at 5853.985 kb on + strand, within Pf6N2E2_5077at 5854.131 kb on - strandat 5854.131 kb on - strandat 5854.154 kb on + strandat 5854.182 kb on + strandat 5854.182 kb on + strandat 5854.183 kb on - strandat 5854.184 kb on + strandat 5854.184 kb on + strandat 5854.184 kb on + strandat 5854.184 kb on + strandat 5854.184 kb on + strandat 5854.184 kb on + strandat 5854.184 kb on + strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.185 kb on - strandat 5854.305 kb on - strandat 5854.306 kb on + strandat 5854.306 kb on + strandat 5854.322 kb on + strandat 5854.322 kb on + strandat 5854.322 kb on + strandat 5854.323 kb on - strandat 5854.323 kb on - strandat 5854.323 kb on - strandat 5854.323 kb on - strandat 5854.323 kb on - strandat 5854.323 kb on - strandat 5854.323 kb on - strandat 5854.325 kb on + strandat 5854.326 kb on - strandat 5854.326 kb on - strandat 5854.326 kb on - strandat 5854.326 kb on - strandat 5854.342 kb on + strandat 5854.342 kb on + strandat 5854.343 kb on - strandat 5854.343 kb on - strandat 5854.343 kb on - strandat 5854.352 kb on - strandat 5854.366 kb on + strandat 5854.367 kb on - strandat 5854.424 kb on - strandat 5854.453 kb on - strandat 5854.453 kb on - strandat 5854.453 kb on - strandat 5854.471 kb on - strandat 5854.474 kb on - strandat 5854.474 kb on - strandat 5854.474 kb on - strandat 5854.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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5,851,245 + Pf6N2E2_5074 0.82 -0.2
5,851,245 + Pf6N2E2_5074 0.82 -0.0
5,851,245 + Pf6N2E2_5074 0.82 -0.2
5,851,246 - Pf6N2E2_5074 0.82 +0.4
5,851,326 + Pf6N2E2_5074 0.87 -1.6
5,851,432 - -0.1
5,851,432 - +1.2
5,851,450 - -0.1
5,851,625 - +0.1
5,851,625 - -0.0
5,851,661 + +0.7
5,851,691 + +0.6
5,851,691 + -0.7
5,851,730 + Pf6N2E2_5075 0.16 -0.7
5,851,731 - Pf6N2E2_5075 0.16 +1.6
5,851,750 + Pf6N2E2_5075 0.20 -0.7
5,851,750 + Pf6N2E2_5075 0.20 +0.6
5,851,753 + Pf6N2E2_5075 0.20 -0.8
5,851,753 + Pf6N2E2_5075 0.20 -0.3
5,851,754 - Pf6N2E2_5075 0.20 -0.9
5,851,800 + Pf6N2E2_5075 0.29 -0.9
5,851,801 - Pf6N2E2_5075 0.29 +0.3
5,851,813 + Pf6N2E2_5075 0.31 -0.4
5,851,843 + Pf6N2E2_5075 0.36 +0.3
5,851,843 + Pf6N2E2_5075 0.36 -1.1
5,851,868 - Pf6N2E2_5075 0.41 +0.2
5,851,868 - Pf6N2E2_5075 0.41 -0.8
5,851,868 - Pf6N2E2_5075 0.41 +0.5
5,851,868 - Pf6N2E2_5075 0.41 +0.4
5,851,942 - Pf6N2E2_5075 0.54 -0.3
5,851,942 - Pf6N2E2_5075 0.54 -0.4
5,852,056 + Pf6N2E2_5075 0.75 -0.4
5,852,056 + Pf6N2E2_5075 0.75 -1.3
5,852,056 + Pf6N2E2_5075 0.75 -0.1
5,852,056 + Pf6N2E2_5075 0.75 +0.1
5,852,056 + Pf6N2E2_5075 0.75 +0.5
5,852,056 - Pf6N2E2_5075 0.75 +0.6
5,852,057 - Pf6N2E2_5075 0.75 -0.5
5,852,057 - Pf6N2E2_5075 0.75 +1.1
5,852,057 - Pf6N2E2_5075 0.75 +1.4
5,852,057 - Pf6N2E2_5075 0.75 -0.6
5,852,057 - Pf6N2E2_5075 0.75 -1.0
5,852,057 - Pf6N2E2_5075 0.75 +0.4
5,852,057 - Pf6N2E2_5075 0.75 +1.1
5,852,057 - Pf6N2E2_5075 0.75 -0.0
5,852,258 + -1.6
5,852,259 - -0.9
5,852,259 - -0.4
5,852,259 - -0.1
5,852,259 - +0.1
5,852,502 + Pf6N2E2_5076 0.19 +1.1
5,852,503 - Pf6N2E2_5076 0.19 -1.3
5,852,603 + Pf6N2E2_5076 0.27 -1.2
5,852,604 - Pf6N2E2_5076 0.27 -1.1
5,852,604 - Pf6N2E2_5076 0.27 -0.5
5,852,604 - Pf6N2E2_5076 0.27 -2.2
5,852,877 + Pf6N2E2_5076 0.47 -1.8
5,852,878 - Pf6N2E2_5076 0.47 -2.0
5,852,948 + Pf6N2E2_5076 0.52 -1.0
5,852,948 + Pf6N2E2_5076 0.52 -0.5
5,853,327 + Pf6N2E2_5076 0.80 +0.8
5,853,328 - Pf6N2E2_5076 0.80 -0.9
5,853,608 + -0.5
5,853,645 - -1.7
5,853,645 - +0.6
5,853,645 - +0.6
5,853,645 - -0.4
5,853,645 - -0.4
5,853,663 + +0.1
5,853,663 + +0.8
5,853,664 - +0.8
5,853,690 + +0.5
5,853,690 + +0.9
5,853,690 + +0.9
5,853,690 + +0.5
5,853,691 - +0.3
5,853,697 + +0.1
5,853,764 + -0.1
5,853,765 - +0.6
5,853,765 - +1.0
5,853,873 - Pf6N2E2_5077 0.21 +0.5
5,853,873 - Pf6N2E2_5077 0.21 -1.2
5,853,873 - Pf6N2E2_5077 0.21 +0.9
5,853,873 - Pf6N2E2_5077 0.21 +0.6
5,853,985 + Pf6N2E2_5077 0.53 +0.7
5,854,131 - +0.4
5,854,131 - +0.3
5,854,154 + +0.4
5,854,182 + +0.1
5,854,182 + +0.3
5,854,183 - +0.2
5,854,184 + -0.2
5,854,184 + +1.3
5,854,184 + -0.3
5,854,184 + -2.3
5,854,184 + -0.6
5,854,184 + -0.2
5,854,184 + +0.4
5,854,185 - +0.2
5,854,185 - -0.9
5,854,185 - +1.0
5,854,185 - +0.6
5,854,185 - +0.3
5,854,185 - +0.4
5,854,185 - -1.0
5,854,185 - +0.5
5,854,185 - -0.1
5,854,185 - -0.1
5,854,185 - +0.6
5,854,185 - +1.0
5,854,305 - +0.2
5,854,306 + +1.0
5,854,306 + +0.6
5,854,322 + +0.9
5,854,322 + -1.5
5,854,322 + +0.6
5,854,323 - +0.5
5,854,323 - +0.1
5,854,323 - +0.7
5,854,323 - +0.6
5,854,323 - +0.6
5,854,323 - +0.3
5,854,323 - -0.8
5,854,325 + +2.2
5,854,326 - +1.3
5,854,326 - +0.4
5,854,326 - -2.4
5,854,326 - +1.8
5,854,342 + -0.3
5,854,342 + +0.0
5,854,343 - +0.3
5,854,343 - +0.5
5,854,343 - -1.8
5,854,352 - +0.2
5,854,366 + +0.1
5,854,367 - +0.5
5,854,424 - +0.4
5,854,453 - -0.6
5,854,453 - -0.7
5,854,453 - +0.3
5,854,471 - +1.2
5,854,474 - +0.3
5,854,474 - -0.3
5,854,474 - +0.7
5,854,474 - +0.1

Or see this region's nucleotide sequence