Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_446 and Pf6N2E2_447 are separated by 174 nucleotides Pf6N2E2_447 and Pf6N2E2_448 are separated by 124 nucleotides
Pf6N2E2_446 - Glutathione reductase (EC 1.8.1.7), at 508,167 to 509,525
_446
Pf6N2E2_447 - Alkyl hydroperoxide reductase protein C (EC 1.6.4.-), at 509,700 to 510,263
_447
Pf6N2E2_448 - Alkyl hydroperoxide reductase protein F (EC 1.6.4.-), at 510,388 to 511,950
_448
Position (kb)
509
510
511 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.750 kb on + strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.751 kb on - strand, within Pf6N2E2_446 at 508.938 kb on + strand, within Pf6N2E2_446 at 508.938 kb on + strand, within Pf6N2E2_446 at 508.938 kb on + strand, within Pf6N2E2_446 at 508.939 kb on - strand, within Pf6N2E2_446 at 509.034 kb on + strand, within Pf6N2E2_446 at 509.375 kb on + strand, within Pf6N2E2_446 at 509.375 kb on + strand, within Pf6N2E2_446 at 509.507 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.540 kb on + strand at 509.541 kb on - strand at 509.541 kb on - strand at 509.541 kb on - strand at 509.541 kb on - strand at 509.580 kb on - strand at 509.583 kb on + strand at 509.584 kb on - strand at 509.656 kb on + strand at 509.656 kb on + strand at 509.656 kb on + strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.706 kb on - strand at 509.724 kb on - strand at 509.814 kb on + strand, within Pf6N2E2_447 at 509.814 kb on + strand, within Pf6N2E2_447 at 509.904 kb on + strand, within Pf6N2E2_447 at 509.905 kb on - strand, within Pf6N2E2_447 at 509.905 kb on - strand, within Pf6N2E2_447 at 509.979 kb on + strand, within Pf6N2E2_447 at 509.980 kb on - strand, within Pf6N2E2_447 at 509.980 kb on - strand, within Pf6N2E2_447 at 509.980 kb on - strand, within Pf6N2E2_447 at 510.169 kb on - strand, within Pf6N2E2_447 at 510.169 kb on - strand, within Pf6N2E2_447 at 510.169 kb on - strand, within Pf6N2E2_447 at 510.261 kb on + strand at 510.261 kb on + strand at 510.262 kb on - strand at 510.262 kb on - strand at 510.262 kb on - strand at 510.262 kb on - strand at 510.262 kb on - strand at 510.262 kb on - strand at 510.262 kb on - strand at 510.298 kb on + strand at 510.298 kb on + strand at 510.298 kb on + strand at 510.298 kb on + strand at 510.299 kb on - strand at 510.299 kb on - strand at 510.299 kb on - strand at 510.299 kb on - strand at 510.299 kb on - strand at 510.299 kb on - strand at 510.299 kb on - strand at 510.387 kb on + strand at 510.388 kb on - strand at 510.388 kb on - strand at 510.405 kb on + strand at 510.405 kb on + strand at 510.424 kb on + strand at 510.504 kb on - strand at 510.538 kb on - strand at 510.538 kb on - strand at 510.538 kb on - strand at 510.538 kb on - strand at 510.754 kb on + strand, within Pf6N2E2_448 at 510.754 kb on + strand, within Pf6N2E2_448 at 510.755 kb on - strand, within Pf6N2E2_448 at 510.755 kb on - strand, within Pf6N2E2_448 at 510.755 kb on - strand, within Pf6N2E2_448 at 510.907 kb on + strand, within Pf6N2E2_448 at 510.908 kb on - strand, within Pf6N2E2_448 at 511.072 kb on + strand, within Pf6N2E2_448 at 511.072 kb on + strand, within Pf6N2E2_448 at 511.072 kb on + strand, within Pf6N2E2_448 at 511.073 kb on - strand, within Pf6N2E2_448 at 511.083 kb on + strand, within Pf6N2E2_448 at 511.222 kb on + strand, within Pf6N2E2_448
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 508,750 + Pf6N2E2_446 0.43 -0.1 508,750 + Pf6N2E2_446 0.43 +1.3 508,750 + Pf6N2E2_446 0.43 +0.5 508,750 + Pf6N2E2_446 0.43 +0.6 508,750 + Pf6N2E2_446 0.43 -0.4 508,750 + Pf6N2E2_446 0.43 +0.3 508,750 + Pf6N2E2_446 0.43 +1.3 508,750 + Pf6N2E2_446 0.43 -0.7 508,750 + Pf6N2E2_446 0.43 +0.7 508,750 + Pf6N2E2_446 0.43 +0.2 508,750 + Pf6N2E2_446 0.43 +0.6 508,751 - Pf6N2E2_446 0.43 +0.7 508,751 - Pf6N2E2_446 0.43 -1.3 508,751 - Pf6N2E2_446 0.43 +0.2 508,751 - Pf6N2E2_446 0.43 -1.0 508,751 - Pf6N2E2_446 0.43 -0.3 508,751 - Pf6N2E2_446 0.43 +1.7 508,751 - Pf6N2E2_446 0.43 -0.6 508,938 + Pf6N2E2_446 0.57 +0.3 508,938 + Pf6N2E2_446 0.57 +0.6 508,938 + Pf6N2E2_446 0.57 -0.0 508,939 - Pf6N2E2_446 0.57 -0.7 509,034 + Pf6N2E2_446 0.64 +0.8 509,375 + Pf6N2E2_446 0.89 +0.2 509,375 + Pf6N2E2_446 0.89 +1.6 509,507 + -0.4 509,540 + -0.1 509,540 + +0.1 509,540 + +0.4 509,540 + +0.6 509,540 + +0.0 509,540 + -0.4 509,540 + +0.4 509,540 + +0.1 509,541 - -1.0 509,541 - -0.8 509,541 - -1.4 509,541 - -1.8 509,580 - +0.5 509,583 + -0.4 509,584 - -0.3 509,656 + -4.1 509,656 + -2.3 509,656 + -2.8 509,706 - -2.3 509,706 - -3.6 509,706 - -3.7 509,724 - -4.4 509,814 + Pf6N2E2_447 0.20 -1.8 509,814 + Pf6N2E2_447 0.20 -1.8 509,904 + Pf6N2E2_447 0.36 -1.5 509,905 - Pf6N2E2_447 0.36 -3.1 509,905 - Pf6N2E2_447 0.36 -2.3 509,979 + Pf6N2E2_447 0.49 -2.6 509,980 - Pf6N2E2_447 0.50 -3.3 509,980 - Pf6N2E2_447 0.50 -1.8 509,980 - Pf6N2E2_447 0.50 -4.8 510,169 - Pf6N2E2_447 0.83 -2.3 510,169 - Pf6N2E2_447 0.83 -4.1 510,169 - Pf6N2E2_447 0.83 -3.5 510,261 + -0.9 510,261 + -2.6 510,262 - -0.3 510,262 - -2.1 510,262 - -0.8 510,262 - -0.7 510,262 - +1.6 510,262 - +0.5 510,262 - -1.7 510,298 + +0.1 510,298 + -0.3 510,298 + -0.4 510,298 + -2.3 510,299 - -3.2 510,299 - -0.7 510,299 - -0.8 510,299 - +0.2 510,299 - -1.3 510,299 - -1.3 510,299 - -3.0 510,387 + -0.8 510,388 - -1.0 510,388 - +1.9 510,405 + +0.2 510,405 + -0.3 510,424 + -1.1 510,504 - -1.7 510,538 - +1.0 510,538 - -0.4 510,538 - +0.2 510,538 - +1.1 510,754 + Pf6N2E2_448 0.23 +0.5 510,754 + Pf6N2E2_448 0.23 -0.5 510,755 - Pf6N2E2_448 0.23 -0.2 510,755 - Pf6N2E2_448 0.23 +1.6 510,755 - Pf6N2E2_448 0.23 +0.5 510,907 + Pf6N2E2_448 0.33 -0.3 510,908 - Pf6N2E2_448 0.33 -0.8 511,072 + Pf6N2E2_448 0.44 +0.3 511,072 + Pf6N2E2_448 0.44 +0.5 511,072 + Pf6N2E2_448 0.44 +0.7 511,073 - Pf6N2E2_448 0.44 +0.1 511,083 + Pf6N2E2_448 0.44 +1.7 511,222 + Pf6N2E2_448 0.53 +0.2
Or see this region's nucleotide sequence