Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4351 and Pf6N2E2_4352 are separated by 148 nucleotides Pf6N2E2_4352 and Pf6N2E2_4353 are separated by 9 nucleotides
Pf6N2E2_4351 - Predicted signal transduction protein, at 5,080,537 to 5,081,868
_4351
Pf6N2E2_4352 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 5,082,017 to 5,084,092
_4352
Pf6N2E2_4353 - Hydrogen peroxide-inducible genes activator, at 5,084,102 to 5,085,022
_4353
Position (kb) 5082
5083
5084
5085 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5081.054 kb on + strand, within Pf6N2E2_4351 at 5081.054 kb on + strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.055 kb on - strand, within Pf6N2E2_4351 at 5081.072 kb on + strand, within Pf6N2E2_4351 at 5081.216 kb on + strand, within Pf6N2E2_4351 at 5081.216 kb on + strand, within Pf6N2E2_4351 at 5081.219 kb on + strand, within Pf6N2E2_4351 at 5081.606 kb on + strand, within Pf6N2E2_4351 at 5081.607 kb on - strand, within Pf6N2E2_4351 at 5081.809 kb on + strand at 5081.809 kb on + strand at 5081.970 kb on + strand at 5081.970 kb on + strand at 5081.970 kb on + strand at 5081.970 kb on + strand at 5081.970 kb on + strand at 5081.970 kb on + strand at 5081.971 kb on - strand at 5081.971 kb on - strand at 5081.971 kb on - strand at 5081.971 kb on - strand at 5081.972 kb on + strand at 5081.973 kb on - strand at 5082.777 kb on + strand, within Pf6N2E2_4352 at 5083.701 kb on + strand, within Pf6N2E2_4352 at 5083.713 kb on + strand, within Pf6N2E2_4352 at 5083.713 kb on + strand, within Pf6N2E2_4352 at 5083.713 kb on + strand, within Pf6N2E2_4352 at 5083.713 kb on + strand, within Pf6N2E2_4352 at 5083.714 kb on - strand, within Pf6N2E2_4352 at 5083.714 kb on - strand, within Pf6N2E2_4352 at 5083.809 kb on + strand, within Pf6N2E2_4352 at 5083.931 kb on + strand at 5083.932 kb on - strand at 5084.103 kb on + strand at 5084.103 kb on + strand at 5084.104 kb on - strand at 5084.104 kb on - strand at 5084.104 kb on - strand at 5084.263 kb on - strand, within Pf6N2E2_4353 at 5084.303 kb on - strand, within Pf6N2E2_4353 at 5084.527 kb on - strand, within Pf6N2E2_4353 at 5084.527 kb on - strand, within Pf6N2E2_4353 at 5084.527 kb on - strand, within Pf6N2E2_4353 at 5084.527 kb on - strand, within Pf6N2E2_4353 at 5084.542 kb on - strand, within Pf6N2E2_4353 at 5084.655 kb on + strand, within Pf6N2E2_4353 at 5085.001 kb on - strand at 5085.001 kb on - strand at 5085.006 kb on - strand at 5085.006 kb on - strand at 5085.054 kb on + strand at 5085.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 5,081,054 + Pf6N2E2_4351 0.39 -1.2 5,081,054 + Pf6N2E2_4351 0.39 -1.0 5,081,055 - Pf6N2E2_4351 0.39 -0.8 5,081,055 - Pf6N2E2_4351 0.39 +0.0 5,081,055 - Pf6N2E2_4351 0.39 +0.0 5,081,055 - Pf6N2E2_4351 0.39 -0.4 5,081,055 - Pf6N2E2_4351 0.39 -1.1 5,081,055 - Pf6N2E2_4351 0.39 -1.2 5,081,055 - Pf6N2E2_4351 0.39 -3.6 5,081,055 - Pf6N2E2_4351 0.39 -1.5 5,081,072 + Pf6N2E2_4351 0.40 +0.2 5,081,216 + Pf6N2E2_4351 0.51 -0.3 5,081,216 + Pf6N2E2_4351 0.51 -0.6 5,081,219 + Pf6N2E2_4351 0.51 -0.1 5,081,606 + Pf6N2E2_4351 0.80 -0.2 5,081,607 - Pf6N2E2_4351 0.80 +0.2 5,081,809 + -0.4 5,081,809 + +0.4 5,081,970 + +0.6 5,081,970 + +0.4 5,081,970 + +0.6 5,081,970 + +0.1 5,081,970 + +0.1 5,081,970 + -0.1 5,081,971 - +2.0 5,081,971 - +0.1 5,081,971 - -0.3 5,081,971 - -0.1 5,081,972 + -0.5 5,081,973 - +0.6 5,082,777 + Pf6N2E2_4352 0.37 -1.7 5,083,701 + Pf6N2E2_4352 0.81 -1.2 5,083,713 + Pf6N2E2_4352 0.82 -1.0 5,083,713 + Pf6N2E2_4352 0.82 -2.6 5,083,713 + Pf6N2E2_4352 0.82 +0.6 5,083,713 + Pf6N2E2_4352 0.82 +0.6 5,083,714 - Pf6N2E2_4352 0.82 -1.4 5,083,714 - Pf6N2E2_4352 0.82 -0.7 5,083,809 + Pf6N2E2_4352 0.86 -1.0 5,083,931 + -2.0 5,083,932 - -2.2 5,084,103 + -1.5 5,084,103 + -3.6 5,084,104 - -0.4 5,084,104 - +0.4 5,084,104 - -0.4 5,084,263 - Pf6N2E2_4353 0.17 -4.0 5,084,303 - Pf6N2E2_4353 0.22 -4.1 5,084,527 - Pf6N2E2_4353 0.46 -4.0 5,084,527 - Pf6N2E2_4353 0.46 -3.4 5,084,527 - Pf6N2E2_4353 0.46 -4.5 5,084,527 - Pf6N2E2_4353 0.46 -3.4 5,084,542 - Pf6N2E2_4353 0.48 -4.3 5,084,655 + Pf6N2E2_4353 0.60 -2.2 5,085,001 - -2.7 5,085,001 - -3.5 5,085,006 - -4.7 5,085,006 - -2.6 5,085,054 + -1.3 5,085,055 - -0.6
Or see this region's nucleotide sequence