Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4352

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4351 and Pf6N2E2_4352 are separated by 148 nucleotidesPf6N2E2_4352 and Pf6N2E2_4353 are separated by 9 nucleotides Pf6N2E2_4351 - Predicted signal transduction protein, at 5,080,537 to 5,081,868 _4351 Pf6N2E2_4352 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 5,082,017 to 5,084,092 _4352 Pf6N2E2_4353 - Hydrogen peroxide-inducible genes activator, at 5,084,102 to 5,085,022 _4353 Position (kb) 5082 5083 5084 5085Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5081.054 kb on + strand, within Pf6N2E2_4351at 5081.054 kb on + strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.055 kb on - strand, within Pf6N2E2_4351at 5081.072 kb on + strand, within Pf6N2E2_4351at 5081.216 kb on + strand, within Pf6N2E2_4351at 5081.216 kb on + strand, within Pf6N2E2_4351at 5081.219 kb on + strand, within Pf6N2E2_4351at 5081.606 kb on + strand, within Pf6N2E2_4351at 5081.607 kb on - strand, within Pf6N2E2_4351at 5081.809 kb on + strandat 5081.809 kb on + strandat 5081.970 kb on + strandat 5081.970 kb on + strandat 5081.970 kb on + strandat 5081.970 kb on + strandat 5081.970 kb on + strandat 5081.970 kb on + strandat 5081.971 kb on - strandat 5081.971 kb on - strandat 5081.971 kb on - strandat 5081.971 kb on - strandat 5081.972 kb on + strandat 5081.973 kb on - strandat 5082.777 kb on + strand, within Pf6N2E2_4352at 5083.701 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.713 kb on + strand, within Pf6N2E2_4352at 5083.714 kb on - strand, within Pf6N2E2_4352at 5083.714 kb on - strand, within Pf6N2E2_4352at 5083.809 kb on + strand, within Pf6N2E2_4352at 5083.931 kb on + strandat 5083.932 kb on - strandat 5084.103 kb on + strandat 5084.103 kb on + strandat 5084.104 kb on - strandat 5084.104 kb on - strandat 5084.104 kb on - strandat 5084.263 kb on - strand, within Pf6N2E2_4353at 5084.303 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.527 kb on - strand, within Pf6N2E2_4353at 5084.542 kb on - strand, within Pf6N2E2_4353at 5084.655 kb on + strand, within Pf6N2E2_4353at 5085.001 kb on - strandat 5085.001 kb on - strandat 5085.006 kb on - strandat 5085.006 kb on - strandat 5085.054 kb on + strandat 5085.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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5,081,054 + Pf6N2E2_4351 0.39 -1.2
5,081,054 + Pf6N2E2_4351 0.39 -1.0
5,081,055 - Pf6N2E2_4351 0.39 -0.8
5,081,055 - Pf6N2E2_4351 0.39 +0.0
5,081,055 - Pf6N2E2_4351 0.39 +0.0
5,081,055 - Pf6N2E2_4351 0.39 -0.4
5,081,055 - Pf6N2E2_4351 0.39 -1.1
5,081,055 - Pf6N2E2_4351 0.39 -1.2
5,081,055 - Pf6N2E2_4351 0.39 -3.6
5,081,055 - Pf6N2E2_4351 0.39 -1.5
5,081,072 + Pf6N2E2_4351 0.40 +0.2
5,081,216 + Pf6N2E2_4351 0.51 -0.3
5,081,216 + Pf6N2E2_4351 0.51 -0.6
5,081,219 + Pf6N2E2_4351 0.51 -0.1
5,081,606 + Pf6N2E2_4351 0.80 -0.2
5,081,607 - Pf6N2E2_4351 0.80 +0.2
5,081,809 + -0.4
5,081,809 + +0.4
5,081,970 + +0.6
5,081,970 + +0.4
5,081,970 + +0.6
5,081,970 + +0.1
5,081,970 + +0.1
5,081,970 + -0.1
5,081,971 - +2.0
5,081,971 - +0.1
5,081,971 - -0.3
5,081,971 - -0.1
5,081,972 + -0.5
5,081,973 - +0.6
5,082,777 + Pf6N2E2_4352 0.37 -1.7
5,083,701 + Pf6N2E2_4352 0.81 -1.2
5,083,713 + Pf6N2E2_4352 0.82 -1.0
5,083,713 + Pf6N2E2_4352 0.82 -2.6
5,083,713 + Pf6N2E2_4352 0.82 +0.6
5,083,713 + Pf6N2E2_4352 0.82 +0.6
5,083,714 - Pf6N2E2_4352 0.82 -1.4
5,083,714 - Pf6N2E2_4352 0.82 -0.7
5,083,809 + Pf6N2E2_4352 0.86 -1.0
5,083,931 + -2.0
5,083,932 - -2.2
5,084,103 + -1.5
5,084,103 + -3.6
5,084,104 - -0.4
5,084,104 - +0.4
5,084,104 - -0.4
5,084,263 - Pf6N2E2_4353 0.17 -4.0
5,084,303 - Pf6N2E2_4353 0.22 -4.1
5,084,527 - Pf6N2E2_4353 0.46 -4.0
5,084,527 - Pf6N2E2_4353 0.46 -3.4
5,084,527 - Pf6N2E2_4353 0.46 -4.5
5,084,527 - Pf6N2E2_4353 0.46 -3.4
5,084,542 - Pf6N2E2_4353 0.48 -4.3
5,084,655 + Pf6N2E2_4353 0.60 -2.2
5,085,001 - -2.7
5,085,001 - -3.5
5,085,006 - -4.7
5,085,006 - -2.6
5,085,054 + -1.3
5,085,055 - -0.6

Or see this region's nucleotide sequence