Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_424

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_422 and Pf6N2E2_423 are separated by 20 nucleotidesPf6N2E2_423 and Pf6N2E2_424 are separated by 129 nucleotidesPf6N2E2_424 and Pf6N2E2_425 are separated by 217 nucleotidesPf6N2E2_425 and Pf6N2E2_426 are separated by 4 nucleotides Pf6N2E2_422 - Na+ driven multidrug efflux pump, at 490,565 to 491,863 _422 Pf6N2E2_423 - Putative phosphatase YfbT, at 491,884 to 492,588 _423 Pf6N2E2_424 - Decarboxylase family protein, at 492,718 to 494,091 _424 Pf6N2E2_425 - FIG00957304: hypothetical protein, at 494,309 to 494,842 _425 Pf6N2E2_426 - Arsenate reductase (EC 1.20.4.1), at 494,847 to 495,302 _426 Position (kb) 492 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.729 kb on + strand, within Pf6N2E2_422at 491.730 kb on - strand, within Pf6N2E2_422at 491.786 kb on + strandat 491.787 kb on - strandat 491.817 kb on - strandat 491.819 kb on + strandat 491.820 kb on - strandat 491.861 kb on + strandat 491.877 kb on + strandat 491.877 kb on + strandat 491.877 kb on + strandat 491.877 kb on + strandat 491.878 kb on - strandat 491.878 kb on - strandat 491.878 kb on - strandat 491.878 kb on - strandat 492.279 kb on + strand, within Pf6N2E2_423at 492.486 kb on + strand, within Pf6N2E2_423at 492.526 kb on + strandat 492.526 kb on + strandat 492.527 kb on - strandat 492.527 kb on - strandat 492.527 kb on - strandat 492.584 kb on + strandat 492.584 kb on + strandat 492.585 kb on - strandat 492.585 kb on - strandat 492.585 kb on - strandat 492.585 kb on - strandat 492.660 kb on + strandat 492.714 kb on + strandat 492.715 kb on - strandat 492.746 kb on + strandat 492.746 kb on + strandat 492.747 kb on - strandat 492.747 kb on - strandat 492.747 kb on - strandat 492.747 kb on - strandat 493.143 kb on - strand, within Pf6N2E2_424at 493.143 kb on - strand, within Pf6N2E2_424at 493.348 kb on + strand, within Pf6N2E2_424at 493.348 kb on + strand, within Pf6N2E2_424at 493.349 kb on - strand, within Pf6N2E2_424at 493.470 kb on + strand, within Pf6N2E2_424at 493.471 kb on - strand, within Pf6N2E2_424at 493.545 kb on + strand, within Pf6N2E2_424at 493.546 kb on - strand, within Pf6N2E2_424at 493.589 kb on + strand, within Pf6N2E2_424at 493.590 kb on - strand, within Pf6N2E2_424at 493.590 kb on - strand, within Pf6N2E2_424at 493.590 kb on - strand, within Pf6N2E2_424at 493.595 kb on + strand, within Pf6N2E2_424at 493.595 kb on + strand, within Pf6N2E2_424at 493.595 kb on + strand, within Pf6N2E2_424at 493.694 kb on + strand, within Pf6N2E2_424at 493.695 kb on - strand, within Pf6N2E2_424at 493.695 kb on - strand, within Pf6N2E2_424at 493.901 kb on + strand, within Pf6N2E2_424at 493.902 kb on - strand, within Pf6N2E2_424at 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.982 kb on + strandat 493.983 kb on - strandat 493.983 kb on - strandat 493.986 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.074 kb on + strandat 494.075 kb on - strandat 494.075 kb on - strandat 494.075 kb on - strandat 494.241 kb on + strandat 494.241 kb on + strandat 494.241 kb on + strandat 494.242 kb on - strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.245 kb on + strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.246 kb on - strandat 494.289 kb on + strandat 494.289 kb on + strandat 494.290 kb on - strandat 494.290 kb on - strandat 494.290 kb on - strandat 494.342 kb on + strandat 494.343 kb on - strandat 494.343 kb on - strandat 494.343 kb on - strandat 494.519 kb on + strand, within Pf6N2E2_425at 494.520 kb on - strand, within Pf6N2E2_425at 494.555 kb on + strand, within Pf6N2E2_425at 494.664 kb on - strand, within Pf6N2E2_425at 494.664 kb on - strand, within Pf6N2E2_425at 494.828 kb on + strandat 495.046 kb on + strand, within Pf6N2E2_426at 495.047 kb on - strand, within Pf6N2E2_426at 495.047 kb on - strand, within Pf6N2E2_426at 495.047 kb on - strand, within Pf6N2E2_426

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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491,729 + Pf6N2E2_422 0.90 +1.8
491,730 - Pf6N2E2_422 0.90 +1.5
491,786 + +1.5
491,787 - -1.0
491,817 - +0.8
491,819 + -0.4
491,820 - +0.5
491,861 + -0.2
491,877 + +1.1
491,877 + +0.3
491,877 + +0.2
491,877 + -0.2
491,878 - +0.8
491,878 - +0.3
491,878 - -0.2
491,878 - +0.8
492,279 + Pf6N2E2_423 0.56 -0.2
492,486 + Pf6N2E2_423 0.85 +0.3
492,526 + -0.5
492,526 + +0.3
492,527 - -0.6
492,527 - +0.0
492,527 - -1.5
492,584 + -0.0
492,584 + -0.1
492,585 - -0.1
492,585 - -0.5
492,585 - +1.0
492,585 - -1.2
492,660 + -0.1
492,714 + +1.2
492,715 - +0.1
492,746 + -2.1
492,746 + -0.2
492,747 - -0.6
492,747 - -1.8
492,747 - -0.1
492,747 - -0.2
493,143 - Pf6N2E2_424 0.31 -1.5
493,143 - Pf6N2E2_424 0.31 -1.6
493,348 + Pf6N2E2_424 0.46 -0.4
493,348 + Pf6N2E2_424 0.46 -0.1
493,349 - Pf6N2E2_424 0.46 -0.7
493,470 + Pf6N2E2_424 0.55 -0.8
493,471 - Pf6N2E2_424 0.55 -1.1
493,545 + Pf6N2E2_424 0.60 -3.1
493,546 - Pf6N2E2_424 0.60 +0.7
493,589 + Pf6N2E2_424 0.63 -0.9
493,590 - Pf6N2E2_424 0.63 -2.1
493,590 - Pf6N2E2_424 0.63 -0.1
493,590 - Pf6N2E2_424 0.63 -3.1
493,595 + Pf6N2E2_424 0.64 -0.4
493,595 + Pf6N2E2_424 0.64 +1.1
493,595 + Pf6N2E2_424 0.64 +0.0
493,694 + Pf6N2E2_424 0.71 +0.7
493,695 - Pf6N2E2_424 0.71 +0.2
493,695 - Pf6N2E2_424 0.71 -0.4
493,901 + Pf6N2E2_424 0.86 +1.1
493,902 - Pf6N2E2_424 0.86 +0.3
493,982 + -0.3
493,982 + +0.2
493,982 + -1.7
493,982 + +0.2
493,982 + +2.1
493,982 + -1.4
493,982 + -0.5
493,982 + -1.4
493,982 + -0.7
493,983 - -1.3
493,983 - +0.1
493,986 + -0.3
494,074 + -1.4
494,074 + -0.3
494,074 + -0.7
494,074 + -2.2
494,074 + +0.3
494,074 + -1.7
494,075 - -0.9
494,075 - -0.6
494,075 - -0.4
494,241 + -1.6
494,241 + -0.4
494,241 + -0.6
494,242 - +0.2
494,245 + +0.4
494,245 + -1.5
494,245 + +0.0
494,245 + +1.3
494,245 + +1.1
494,245 + +0.2
494,246 - -0.1
494,246 - +0.5
494,246 - +0.5
494,246 - +0.2
494,246 - +0.3
494,289 + +1.1
494,289 + +1.3
494,290 - -0.3
494,290 - +0.1
494,290 - +0.5
494,342 + +0.3
494,343 - +0.2
494,343 - +0.7
494,343 - +0.5
494,519 + Pf6N2E2_425 0.39 +1.5
494,520 - Pf6N2E2_425 0.40 -0.1
494,555 + Pf6N2E2_425 0.46 -0.6
494,664 - Pf6N2E2_425 0.66 -0.5
494,664 - Pf6N2E2_425 0.66 -0.8
494,828 + -0.8
495,046 + Pf6N2E2_426 0.44 -0.3
495,047 - Pf6N2E2_426 0.44 -0.4
495,047 - Pf6N2E2_426 0.44 -1.3
495,047 - Pf6N2E2_426 0.44 +0.7

Or see this region's nucleotide sequence