Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4204 and Pf6N2E2_4205 are separated by 18 nucleotides Pf6N2E2_4205 and Pf6N2E2_4206 are separated by 9 nucleotides Pf6N2E2_4206 and Pf6N2E2_4207 are separated by 572 nucleotides
Pf6N2E2_4204 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 4,895,932 to 4,896,567
_4204
Pf6N2E2_4205 - Chromosome (plasmid) partitioning protein ParA, at 4,896,586 to 4,897,383
_4205
Pf6N2E2_4206 - Chromosome (plasmid) partitioning protein ParB, at 4,897,393 to 4,898,265
_4206
Pf6N2E2_4207 - ATP synthase F0 sector subunit a, at 4,898,838 to 4,899,707
_4207
Position (kb)
4897
4898
4899 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4896.549 kb on - strand at 4896.592 kb on - strand at 4896.597 kb on - strand at 4896.597 kb on - strand at 4896.646 kb on - strand at 4896.766 kb on + strand, within Pf6N2E2_4205 at 4896.767 kb on - strand, within Pf6N2E2_4205 at 4896.941 kb on - strand, within Pf6N2E2_4205 at 4896.947 kb on - strand, within Pf6N2E2_4205 at 4896.947 kb on - strand, within Pf6N2E2_4205 at 4896.947 kb on - strand, within Pf6N2E2_4205 at 4897.039 kb on + strand, within Pf6N2E2_4205 at 4897.040 kb on - strand, within Pf6N2E2_4205 at 4897.040 kb on - strand, within Pf6N2E2_4205 at 4897.142 kb on - strand, within Pf6N2E2_4205 at 4897.142 kb on - strand, within Pf6N2E2_4205 at 4897.381 kb on + strand at 4897.381 kb on + strand at 4897.537 kb on + strand, within Pf6N2E2_4206 at 4897.537 kb on + strand, within Pf6N2E2_4206 at 4897.538 kb on - strand, within Pf6N2E2_4206 at 4898.280 kb on + strand at 4898.280 kb on + strand at 4898.280 kb on + strand at 4898.301 kb on + strand at 4898.301 kb on + strand at 4898.301 kb on + strand at 4898.301 kb on + strand at 4898.334 kb on + strand at 4898.336 kb on + strand at 4898.365 kb on + strand at 4898.383 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 4,896,549 - -3.0 4,896,592 - -1.0 4,896,597 - -2.2 4,896,597 - -2.2 4,896,646 - +0.1 4,896,766 + Pf6N2E2_4205 0.23 +0.6 4,896,767 - Pf6N2E2_4205 0.23 -0.8 4,896,941 - Pf6N2E2_4205 0.44 -0.2 4,896,947 - Pf6N2E2_4205 0.45 +1.6 4,896,947 - Pf6N2E2_4205 0.45 -0.7 4,896,947 - Pf6N2E2_4205 0.45 +0.1 4,897,039 + Pf6N2E2_4205 0.57 +1.2 4,897,040 - Pf6N2E2_4205 0.57 -2.2 4,897,040 - Pf6N2E2_4205 0.57 -0.3 4,897,142 - Pf6N2E2_4205 0.70 -0.1 4,897,142 - Pf6N2E2_4205 0.70 +0.0 4,897,381 + -1.3 4,897,381 + -1.7 4,897,537 + Pf6N2E2_4206 0.16 +0.9 4,897,537 + Pf6N2E2_4206 0.16 -1.5 4,897,538 - Pf6N2E2_4206 0.17 -1.3 4,898,280 + +0.4 4,898,280 + +0.7 4,898,280 + +0.2 4,898,301 + +0.3 4,898,301 + +0.5 4,898,301 + +1.6 4,898,301 + +0.2 4,898,334 + +0.6 4,898,336 + -1.7 4,898,365 + +0.6 4,898,383 + -2.4
Or see this region's nucleotide sequence