Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4197 and Pf6N2E2_4198 are separated by 50 nucleotides Pf6N2E2_4198 and Pf6N2E2_4199 are separated by 39 nucleotides
Pf6N2E2_4197 - DNA recombination and repair protein RecF, at 4,885,177 to 4,886,250
_4197
Pf6N2E2_4198 - DNA polymerase III beta subunit (EC 2.7.7.7), at 4,886,301 to 4,887,404
_4198
Pf6N2E2_4199 - Chromosomal replication initiator protein DnaA, at 4,887,444 to 4,888,964
_4199
Position (kb)
4886
4887
4888 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4885.307 kb on - strand, within Pf6N2E2_4197 at 4885.307 kb on - strand, within Pf6N2E2_4197 at 4885.307 kb on - strand, within Pf6N2E2_4197 at 4885.380 kb on - strand, within Pf6N2E2_4197 at 4885.380 kb on - strand, within Pf6N2E2_4197 at 4885.380 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.384 kb on - strand, within Pf6N2E2_4197 at 4885.448 kb on - strand, within Pf6N2E2_4197 at 4885.617 kb on - strand, within Pf6N2E2_4197 at 4885.617 kb on - strand, within Pf6N2E2_4197 at 4885.617 kb on - strand, within Pf6N2E2_4197 at 4885.617 kb on - strand, within Pf6N2E2_4197 at 4885.617 kb on - strand, within Pf6N2E2_4197 at 4885.692 kb on - strand, within Pf6N2E2_4197 at 4885.692 kb on - strand, within Pf6N2E2_4197 at 4885.692 kb on - strand, within Pf6N2E2_4197 at 4885.692 kb on - strand, within Pf6N2E2_4197 at 4885.692 kb on - strand, within Pf6N2E2_4197 at 4885.692 kb on - strand, within Pf6N2E2_4197 at 4885.704 kb on - strand, within Pf6N2E2_4197 at 4885.774 kb on - strand, within Pf6N2E2_4197 at 4885.906 kb on + strand, within Pf6N2E2_4197 at 4885.906 kb on + strand, within Pf6N2E2_4197 at 4885.906 kb on + strand, within Pf6N2E2_4197 at 4885.907 kb on - strand, within Pf6N2E2_4197 at 4886.037 kb on + strand, within Pf6N2E2_4197 at 4886.093 kb on + strand, within Pf6N2E2_4197 at 4886.093 kb on + strand, within Pf6N2E2_4197 at 4886.094 kb on - strand, within Pf6N2E2_4197 at 4886.272 kb on + strand at 4886.273 kb on - strand at 4886.273 kb on - strand at 4886.273 kb on - strand at 4886.273 kb on - strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.282 kb on + strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.283 kb on - strand at 4886.302 kb on + strand at 4886.302 kb on + strand at 4886.302 kb on + strand at 4886.302 kb on + strand at 4886.303 kb on - strand at 4886.303 kb on - strand at 4886.303 kb on - strand at 4886.303 kb on - strand at 4887.423 kb on - strand at 4887.423 kb on - strand at 4887.423 kb on - strand at 4887.426 kb on - strand at 4887.426 kb on - strand at 4887.426 kb on - strand at 4887.426 kb on - strand at 4887.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 4,885,307 - Pf6N2E2_4197 0.12 +0.6 4,885,307 - Pf6N2E2_4197 0.12 -2.1 4,885,307 - Pf6N2E2_4197 0.12 -1.5 4,885,380 - Pf6N2E2_4197 0.19 -1.7 4,885,380 - Pf6N2E2_4197 0.19 -1.9 4,885,380 - Pf6N2E2_4197 0.19 -2.0 4,885,384 - Pf6N2E2_4197 0.19 -1.1 4,885,384 - Pf6N2E2_4197 0.19 -0.8 4,885,384 - Pf6N2E2_4197 0.19 -2.0 4,885,384 - Pf6N2E2_4197 0.19 -1.6 4,885,384 - Pf6N2E2_4197 0.19 -2.3 4,885,384 - Pf6N2E2_4197 0.19 -1.9 4,885,384 - Pf6N2E2_4197 0.19 -1.9 4,885,448 - Pf6N2E2_4197 0.25 +0.3 4,885,617 - Pf6N2E2_4197 0.41 -0.2 4,885,617 - Pf6N2E2_4197 0.41 -0.9 4,885,617 - Pf6N2E2_4197 0.41 +0.6 4,885,617 - Pf6N2E2_4197 0.41 -0.9 4,885,617 - Pf6N2E2_4197 0.41 -0.6 4,885,692 - Pf6N2E2_4197 0.48 -2.0 4,885,692 - Pf6N2E2_4197 0.48 -1.7 4,885,692 - Pf6N2E2_4197 0.48 -2.7 4,885,692 - Pf6N2E2_4197 0.48 -2.2 4,885,692 - Pf6N2E2_4197 0.48 -2.8 4,885,692 - Pf6N2E2_4197 0.48 -0.9 4,885,704 - Pf6N2E2_4197 0.49 -1.7 4,885,774 - Pf6N2E2_4197 0.56 +0.6 4,885,906 + Pf6N2E2_4197 0.68 -0.7 4,885,906 + Pf6N2E2_4197 0.68 -1.8 4,885,906 + Pf6N2E2_4197 0.68 -0.8 4,885,907 - Pf6N2E2_4197 0.68 -1.5 4,886,037 + Pf6N2E2_4197 0.80 -2.4 4,886,093 + Pf6N2E2_4197 0.85 -2.2 4,886,093 + Pf6N2E2_4197 0.85 -3.4 4,886,094 - Pf6N2E2_4197 0.85 -0.4 4,886,272 + -3.1 4,886,273 - -0.2 4,886,273 - -1.9 4,886,273 - -1.3 4,886,273 - +0.9 4,886,282 + -2.3 4,886,282 + -1.1 4,886,282 + -2.3 4,886,282 + -4.2 4,886,282 + -2.3 4,886,282 + -1.4 4,886,282 + -0.5 4,886,282 + -1.7 4,886,283 - -1.6 4,886,283 - +1.1 4,886,283 - -1.7 4,886,283 - -1.5 4,886,283 - -1.1 4,886,283 - -0.1 4,886,283 - -2.4 4,886,283 - -0.4 4,886,283 - -1.7 4,886,283 - -0.2 4,886,283 - -2.3 4,886,283 - +0.5 4,886,283 - -0.3 4,886,283 - +0.3 4,886,283 - +0.3 4,886,283 - -0.5 4,886,283 - -0.2 4,886,302 + -1.1 4,886,302 + -1.1 4,886,302 + -0.4 4,886,302 + -2.0 4,886,303 - -1.2 4,886,303 - -0.1 4,886,303 - +0.5 4,886,303 - -0.3 4,887,423 - -1.4 4,887,423 - +0.8 4,887,423 - -2.5 4,887,426 - +0.6 4,887,426 - +0.5 4,887,426 - +0.2 4,887,426 - +0.2 4,887,426 - -1.2
Or see this region's nucleotide sequence