Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4074 and Pf6N2E2_4075 are separated by 147 nucleotides Pf6N2E2_4075 and Pf6N2E2_4076 are separated by 268 nucleotides
Pf6N2E2_4074 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 4,750,104 to 4,752,395
_4074
Pf6N2E2_4075 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 4,752,543 to 4,753,541
_4075
Pf6N2E2_4076 - L-Proline/Glycine betaine transporter ProP, at 4,753,810 to 4,755,108
_4076
Position (kb)
4752
4753
4754 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.596 kb on + strand, within Pf6N2E2_4074 at 4751.597 kb on - strand, within Pf6N2E2_4074 at 4751.597 kb on - strand, within Pf6N2E2_4074 at 4751.597 kb on - strand, within Pf6N2E2_4074 at 4751.597 kb on - strand, within Pf6N2E2_4074 at 4751.840 kb on - strand, within Pf6N2E2_4074 at 4751.845 kb on + strand, within Pf6N2E2_4074 at 4751.845 kb on + strand, within Pf6N2E2_4074 at 4751.895 kb on - strand, within Pf6N2E2_4074 at 4751.896 kb on + strand, within Pf6N2E2_4074 at 4751.896 kb on + strand, within Pf6N2E2_4074 at 4751.896 kb on + strand, within Pf6N2E2_4074 at 4751.896 kb on + strand, within Pf6N2E2_4074 at 4751.896 kb on + strand, within Pf6N2E2_4074 at 4751.896 kb on + strand, within Pf6N2E2_4074 at 4751.897 kb on - strand, within Pf6N2E2_4074 at 4751.897 kb on - strand, within Pf6N2E2_4074 at 4751.897 kb on - strand, within Pf6N2E2_4074 at 4751.897 kb on - strand, within Pf6N2E2_4074 at 4751.897 kb on - strand, within Pf6N2E2_4074 at 4751.910 kb on + strand, within Pf6N2E2_4074 at 4751.910 kb on + strand, within Pf6N2E2_4074 at 4752.202 kb on + strand at 4752.202 kb on + strand at 4752.202 kb on + strand at 4752.227 kb on + strand at 4752.228 kb on - strand at 4752.228 kb on - strand at 4752.265 kb on + strand at 4752.266 kb on - strand at 4752.300 kb on - strand at 4752.327 kb on - strand at 4752.359 kb on + strand at 4752.360 kb on - strand at 4752.411 kb on + strand at 4752.541 kb on + strand at 4752.541 kb on + strand at 4752.542 kb on - strand at 4752.542 kb on - strand at 4752.544 kb on + strand at 4752.544 kb on + strand at 4752.544 kb on + strand at 4752.545 kb on - strand at 4752.545 kb on - strand at 4752.545 kb on - strand at 4752.626 kb on - strand at 4752.626 kb on - strand at 4752.733 kb on + strand, within Pf6N2E2_4075 at 4752.734 kb on - strand, within Pf6N2E2_4075 at 4752.754 kb on + strand, within Pf6N2E2_4075 at 4752.754 kb on + strand, within Pf6N2E2_4075 at 4752.898 kb on - strand, within Pf6N2E2_4075 at 4752.940 kb on + strand, within Pf6N2E2_4075 at 4752.941 kb on - strand, within Pf6N2E2_4075 at 4752.941 kb on - strand, within Pf6N2E2_4075 at 4752.979 kb on + strand, within Pf6N2E2_4075 at 4753.094 kb on + strand, within Pf6N2E2_4075 at 4753.156 kb on - strand, within Pf6N2E2_4075 at 4753.156 kb on - strand, within Pf6N2E2_4075 at 4753.205 kb on - strand, within Pf6N2E2_4075 at 4753.335 kb on + strand, within Pf6N2E2_4075 at 4753.335 kb on + strand, within Pf6N2E2_4075 at 4753.335 kb on + strand, within Pf6N2E2_4075 at 4753.336 kb on - strand, within Pf6N2E2_4075 at 4753.357 kb on + strand, within Pf6N2E2_4075 at 4753.358 kb on - strand, within Pf6N2E2_4075 at 4753.426 kb on - strand, within Pf6N2E2_4075 at 4753.546 kb on + strand at 4753.546 kb on + strand at 4753.547 kb on - strand at 4753.547 kb on - strand at 4753.547 kb on - strand at 4753.559 kb on + strand at 4753.559 kb on + strand at 4753.559 kb on + strand at 4753.560 kb on - strand at 4753.560 kb on - strand at 4753.560 kb on - strand at 4753.569 kb on + strand at 4753.569 kb on + strand at 4753.569 kb on + strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.570 kb on - strand at 4753.582 kb on + strand at 4753.583 kb on - strand at 4753.583 kb on - strand at 4753.588 kb on + strand at 4753.606 kb on + strand at 4753.606 kb on + strand at 4753.606 kb on + strand at 4753.607 kb on - strand at 4753.607 kb on - strand at 4753.617 kb on + strand at 4753.617 kb on + strand at 4753.618 kb on - strand at 4753.618 kb on - strand at 4753.618 kb on - strand at 4753.652 kb on - strand at 4753.652 kb on - strand at 4753.756 kb on + strand at 4753.756 kb on + strand at 4753.757 kb on - strand at 4753.774 kb on + strand at 4753.774 kb on + strand at 4753.811 kb on + strand at 4753.811 kb on + strand at 4753.812 kb on - strand at 4753.812 kb on - strand at 4753.812 kb on - strand at 4753.832 kb on + strand at 4753.841 kb on - strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.874 kb on + strand at 4753.875 kb on - strand at 4753.877 kb on + strand at 4753.877 kb on + strand at 4753.878 kb on - strand at 4753.961 kb on + strand, within Pf6N2E2_4076 at 4753.961 kb on + strand, within Pf6N2E2_4076 at 4753.961 kb on + strand, within Pf6N2E2_4076 at 4753.962 kb on - strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.018 kb on + strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.019 kb on - strand, within Pf6N2E2_4076 at 4754.037 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.063 kb on + strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.064 kb on - strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.105 kb on + strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.106 kb on - strand, within Pf6N2E2_4076 at 4754.229 kb on + strand, within Pf6N2E2_4076 at 4754.230 kb on - strand, within Pf6N2E2_4076 at 4754.230 kb on - strand, within Pf6N2E2_4076 at 4754.264 kb on + strand, within Pf6N2E2_4076 at 4754.264 kb on + strand, within Pf6N2E2_4076 at 4754.264 kb on + strand, within Pf6N2E2_4076 at 4754.462 kb on + strand, within Pf6N2E2_4076 at 4754.462 kb on + strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.463 kb on - strand, within Pf6N2E2_4076 at 4754.483 kb on - strand, within Pf6N2E2_4076 at 4754.483 kb on - strand, within Pf6N2E2_4076 at 4754.516 kb on + strand, within Pf6N2E2_4076 at 4754.517 kb on - strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.538 kb on + strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.539 kb on - strand, within Pf6N2E2_4076 at 4754.540 kb on + strand, within Pf6N2E2_4076 at 4754.541 kb on - strand, within Pf6N2E2_4076
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 4,751,596 + Pf6N2E2_4074 0.65 -2.8 4,751,596 + Pf6N2E2_4074 0.65 -2.4 4,751,596 + Pf6N2E2_4074 0.65 -1.4 4,751,596 + Pf6N2E2_4074 0.65 -2.2 4,751,596 + Pf6N2E2_4074 0.65 -2.8 4,751,596 + Pf6N2E2_4074 0.65 -2.0 4,751,596 + Pf6N2E2_4074 0.65 -0.5 4,751,596 + Pf6N2E2_4074 0.65 -2.2 4,751,596 + Pf6N2E2_4074 0.65 -3.8 4,751,597 - Pf6N2E2_4074 0.65 -1.2 4,751,597 - Pf6N2E2_4074 0.65 -2.4 4,751,597 - Pf6N2E2_4074 0.65 -2.1 4,751,597 - Pf6N2E2_4074 0.65 -1.4 4,751,840 - Pf6N2E2_4074 0.76 -2.1 4,751,845 + Pf6N2E2_4074 0.76 -1.8 4,751,845 + Pf6N2E2_4074 0.76 -0.4 4,751,895 - Pf6N2E2_4074 0.78 -0.4 4,751,896 + Pf6N2E2_4074 0.78 -0.7 4,751,896 + Pf6N2E2_4074 0.78 -1.3 4,751,896 + Pf6N2E2_4074 0.78 -3.5 4,751,896 + Pf6N2E2_4074 0.78 -1.7 4,751,896 + Pf6N2E2_4074 0.78 -0.1 4,751,896 + Pf6N2E2_4074 0.78 -0.4 4,751,897 - Pf6N2E2_4074 0.78 -0.7 4,751,897 - Pf6N2E2_4074 0.78 -1.4 4,751,897 - Pf6N2E2_4074 0.78 -0.5 4,751,897 - Pf6N2E2_4074 0.78 -1.7 4,751,897 - Pf6N2E2_4074 0.78 -3.1 4,751,910 + Pf6N2E2_4074 0.79 +0.1 4,751,910 + Pf6N2E2_4074 0.79 -1.3 4,752,202 + -1.5 4,752,202 + -0.8 4,752,202 + -2.0 4,752,227 + -3.0 4,752,228 - -1.3 4,752,228 - -2.4 4,752,265 + -1.1 4,752,266 - -1.4 4,752,300 - -1.4 4,752,327 - -2.7 4,752,359 + -2.0 4,752,360 - -0.8 4,752,411 + -1.5 4,752,541 + -0.6 4,752,541 + -0.4 4,752,542 - -0.7 4,752,542 - +1.0 4,752,544 + -2.1 4,752,544 + +0.1 4,752,544 + +0.1 4,752,545 - -0.9 4,752,545 - -1.5 4,752,545 - -0.2 4,752,626 - +0.9 4,752,626 - +0.6 4,752,733 + Pf6N2E2_4075 0.19 +2.4 4,752,734 - Pf6N2E2_4075 0.19 -1.1 4,752,754 + Pf6N2E2_4075 0.21 -1.7 4,752,754 + Pf6N2E2_4075 0.21 +0.6 4,752,898 - Pf6N2E2_4075 0.36 -1.4 4,752,940 + Pf6N2E2_4075 0.40 -0.2 4,752,941 - Pf6N2E2_4075 0.40 -0.0 4,752,941 - Pf6N2E2_4075 0.40 +1.6 4,752,979 + Pf6N2E2_4075 0.44 -1.4 4,753,094 + Pf6N2E2_4075 0.55 -0.4 4,753,156 - Pf6N2E2_4075 0.61 -0.2 4,753,156 - Pf6N2E2_4075 0.61 -0.9 4,753,205 - Pf6N2E2_4075 0.66 -0.2 4,753,335 + Pf6N2E2_4075 0.79 +1.3 4,753,335 + Pf6N2E2_4075 0.79 -1.0 4,753,335 + Pf6N2E2_4075 0.79 -0.2 4,753,336 - Pf6N2E2_4075 0.79 -0.6 4,753,357 + Pf6N2E2_4075 0.81 -2.2 4,753,358 - Pf6N2E2_4075 0.82 -2.0 4,753,426 - Pf6N2E2_4075 0.88 -1.0 4,753,546 + -1.5 4,753,546 + -2.0 4,753,547 - -1.7 4,753,547 - -1.1 4,753,547 - -0.8 4,753,559 + -1.4 4,753,559 + -0.9 4,753,559 + -1.5 4,753,560 - -0.5 4,753,560 - +0.8 4,753,560 - -0.4 4,753,569 + -1.9 4,753,569 + +0.6 4,753,569 + -1.0 4,753,570 - +0.4 4,753,570 - -0.5 4,753,570 - -1.2 4,753,570 - +0.3 4,753,570 - +0.4 4,753,570 - +1.8 4,753,582 + -2.9 4,753,583 - +0.4 4,753,583 - +1.6 4,753,588 + -2.0 4,753,606 + -0.1 4,753,606 + -0.0 4,753,606 + +0.4 4,753,607 - -0.4 4,753,607 - +0.0 4,753,617 + -1.8 4,753,617 + -0.7 4,753,618 - +0.5 4,753,618 - -0.2 4,753,618 - +0.8 4,753,652 - +1.0 4,753,652 - +0.4 4,753,756 + +1.6 4,753,756 + +0.6 4,753,757 - +1.7 4,753,774 + +0.3 4,753,774 + +0.2 4,753,811 + +1.0 4,753,811 + +0.4 4,753,812 - +0.9 4,753,812 - +0.3 4,753,812 - +0.4 4,753,832 + +0.8 4,753,841 - -0.4 4,753,874 + +0.4 4,753,874 + +0.5 4,753,874 + +0.8 4,753,874 + -0.2 4,753,874 + -1.3 4,753,875 - +2.4 4,753,877 + +0.8 4,753,877 + +1.3 4,753,878 - -1.4 4,753,961 + Pf6N2E2_4076 0.12 +1.0 4,753,961 + Pf6N2E2_4076 0.12 +1.0 4,753,961 + Pf6N2E2_4076 0.12 +0.4 4,753,962 - Pf6N2E2_4076 0.12 +0.2 4,754,018 + Pf6N2E2_4076 0.16 +0.1 4,754,018 + Pf6N2E2_4076 0.16 -1.2 4,754,018 + Pf6N2E2_4076 0.16 -0.2 4,754,018 + Pf6N2E2_4076 0.16 -1.0 4,754,018 + Pf6N2E2_4076 0.16 +0.3 4,754,019 - Pf6N2E2_4076 0.16 +1.0 4,754,019 - Pf6N2E2_4076 0.16 +0.4 4,754,019 - Pf6N2E2_4076 0.16 +0.8 4,754,019 - Pf6N2E2_4076 0.16 +0.2 4,754,019 - Pf6N2E2_4076 0.16 +0.1 4,754,037 + Pf6N2E2_4076 0.17 -0.2 4,754,063 + Pf6N2E2_4076 0.19 +0.1 4,754,063 + Pf6N2E2_4076 0.19 -0.6 4,754,063 + Pf6N2E2_4076 0.19 -0.5 4,754,063 + Pf6N2E2_4076 0.19 +0.2 4,754,064 - Pf6N2E2_4076 0.20 +1.3 4,754,064 - Pf6N2E2_4076 0.20 +0.5 4,754,064 - Pf6N2E2_4076 0.20 +0.7 4,754,064 - Pf6N2E2_4076 0.20 -0.2 4,754,105 + Pf6N2E2_4076 0.23 +1.9 4,754,105 + Pf6N2E2_4076 0.23 -0.8 4,754,105 + Pf6N2E2_4076 0.23 +0.9 4,754,105 + Pf6N2E2_4076 0.23 -0.9 4,754,105 + Pf6N2E2_4076 0.23 +0.5 4,754,105 + Pf6N2E2_4076 0.23 +0.0 4,754,106 - Pf6N2E2_4076 0.23 +0.7 4,754,106 - Pf6N2E2_4076 0.23 +0.6 4,754,106 - Pf6N2E2_4076 0.23 -0.1 4,754,106 - Pf6N2E2_4076 0.23 -2.4 4,754,106 - Pf6N2E2_4076 0.23 +1.6 4,754,229 + Pf6N2E2_4076 0.32 -1.0 4,754,230 - Pf6N2E2_4076 0.32 +0.1 4,754,230 - Pf6N2E2_4076 0.32 +0.3 4,754,264 + Pf6N2E2_4076 0.35 +0.5 4,754,264 + Pf6N2E2_4076 0.35 -0.1 4,754,264 + Pf6N2E2_4076 0.35 +0.0 4,754,462 + Pf6N2E2_4076 0.50 -0.3 4,754,462 + Pf6N2E2_4076 0.50 +0.5 4,754,463 - Pf6N2E2_4076 0.50 -2.8 4,754,463 - Pf6N2E2_4076 0.50 +0.4 4,754,463 - Pf6N2E2_4076 0.50 +0.6 4,754,463 - Pf6N2E2_4076 0.50 +0.7 4,754,463 - Pf6N2E2_4076 0.50 -0.4 4,754,463 - Pf6N2E2_4076 0.50 +0.8 4,754,483 - Pf6N2E2_4076 0.52 +1.3 4,754,483 - Pf6N2E2_4076 0.52 +1.4 4,754,516 + Pf6N2E2_4076 0.54 +0.2 4,754,517 - Pf6N2E2_4076 0.54 +0.1 4,754,538 + Pf6N2E2_4076 0.56 +0.5 4,754,538 + Pf6N2E2_4076 0.56 +0.2 4,754,538 + Pf6N2E2_4076 0.56 +0.6 4,754,538 + Pf6N2E2_4076 0.56 -0.1 4,754,538 + Pf6N2E2_4076 0.56 +0.1 4,754,538 + Pf6N2E2_4076 0.56 -0.3 4,754,539 - Pf6N2E2_4076 0.56 +0.5 4,754,539 - Pf6N2E2_4076 0.56 -0.2 4,754,539 - Pf6N2E2_4076 0.56 -0.3 4,754,539 - Pf6N2E2_4076 0.56 -1.8 4,754,539 - Pf6N2E2_4076 0.56 +0.5 4,754,539 - Pf6N2E2_4076 0.56 -0.2 4,754,539 - Pf6N2E2_4076 0.56 +0.4 4,754,539 - Pf6N2E2_4076 0.56 +0.5 4,754,539 - Pf6N2E2_4076 0.56 +0.6 4,754,540 + Pf6N2E2_4076 0.56 +0.0 4,754,541 - Pf6N2E2_4076 0.56 -0.1
Or see this region's nucleotide sequence