Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3899

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3897 and Pf6N2E2_3898 are separated by 391 nucleotidesPf6N2E2_3898 and Pf6N2E2_3899 are separated by 67 nucleotidesPf6N2E2_3899 and Pf6N2E2_3900 are separated by 178 nucleotides Pf6N2E2_3897 - hypothetical protein, at 4,531,251 to 4,531,517 _3897 Pf6N2E2_3898 - FIG00961586: hypothetical protein, at 4,531,909 to 4,532,262 _3898 Pf6N2E2_3899 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 4,532,330 to 4,533,874 _3899 Pf6N2E2_3900 - 33 kDa chaperonin (Heat shock protein 33) (HSP33), at 4,534,053 to 4,534,955 _3900 Position (kb) 4532 4533 4534Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4531.405 kb on + strand, within Pf6N2E2_3897at 4531.406 kb on - strand, within Pf6N2E2_3897at 4531.406 kb on - strand, within Pf6N2E2_3897at 4531.406 kb on - strand, within Pf6N2E2_3897at 4531.458 kb on + strand, within Pf6N2E2_3897at 4531.458 kb on + strand, within Pf6N2E2_3897at 4531.459 kb on - strand, within Pf6N2E2_3897at 4531.459 kb on - strand, within Pf6N2E2_3897at 4531.459 kb on - strand, within Pf6N2E2_3897at 4531.459 kb on - strand, within Pf6N2E2_3897at 4531.459 kb on - strand, within Pf6N2E2_3897at 4531.515 kb on + strandat 4531.519 kb on + strandat 4531.520 kb on - strandat 4531.529 kb on + strandat 4531.731 kb on + strandat 4531.731 kb on + strandat 4531.731 kb on + strandat 4531.731 kb on + strandat 4531.796 kb on + strandat 4531.861 kb on + strandat 4531.862 kb on - strandat 4532.107 kb on + strand, within Pf6N2E2_3898at 4532.108 kb on - strand, within Pf6N2E2_3898at 4532.122 kb on + strand, within Pf6N2E2_3898at 4532.123 kb on - strand, within Pf6N2E2_3898at 4532.123 kb on - strand, within Pf6N2E2_3898at 4532.182 kb on - strand, within Pf6N2E2_3898at 4532.182 kb on - strand, within Pf6N2E2_3898at 4532.209 kb on + strand, within Pf6N2E2_3898at 4532.209 kb on + strand, within Pf6N2E2_3898at 4532.209 kb on + strand, within Pf6N2E2_3898at 4532.209 kb on + strand, within Pf6N2E2_3898at 4532.209 kb on + strand, within Pf6N2E2_3898at 4532.209 kb on + strand, within Pf6N2E2_3898at 4532.210 kb on - strand, within Pf6N2E2_3898at 4532.210 kb on - strand, within Pf6N2E2_3898at 4532.210 kb on - strand, within Pf6N2E2_3898at 4532.210 kb on - strand, within Pf6N2E2_3898at 4532.239 kb on - strandat 4532.267 kb on + strandat 4532.268 kb on - strandat 4532.268 kb on - strandat 4532.331 kb on + strandat 4532.331 kb on + strandat 4532.331 kb on + strandat 4532.331 kb on + strandat 4532.331 kb on + strandat 4532.332 kb on - strandat 4532.332 kb on - strandat 4532.332 kb on - strandat 4532.332 kb on - strandat 4532.646 kb on + strand, within Pf6N2E2_3899at 4532.799 kb on + strand, within Pf6N2E2_3899at 4532.800 kb on - strand, within Pf6N2E2_3899at 4533.102 kb on + strand, within Pf6N2E2_3899at 4533.480 kb on + strand, within Pf6N2E2_3899at 4533.480 kb on + strand, within Pf6N2E2_3899at 4533.480 kb on + strand, within Pf6N2E2_3899at 4533.481 kb on - strand, within Pf6N2E2_3899at 4533.481 kb on - strand, within Pf6N2E2_3899at 4533.481 kb on - strand, within Pf6N2E2_3899at 4533.481 kb on - strand, within Pf6N2E2_3899at 4533.559 kb on - strand, within Pf6N2E2_3899at 4533.559 kb on - strand, within Pf6N2E2_3899at 4533.578 kb on + strand, within Pf6N2E2_3899at 4533.579 kb on - strand, within Pf6N2E2_3899at 4533.579 kb on - strand, within Pf6N2E2_3899at 4533.579 kb on - strand, within Pf6N2E2_3899at 4533.579 kb on - strand, within Pf6N2E2_3899at 4533.579 kb on - strand, within Pf6N2E2_3899at 4533.579 kb on - strand, within Pf6N2E2_3899at 4533.618 kb on + strand, within Pf6N2E2_3899at 4533.618 kb on + strand, within Pf6N2E2_3899at 4533.618 kb on + strand, within Pf6N2E2_3899at 4533.619 kb on - strand, within Pf6N2E2_3899at 4533.619 kb on - strand, within Pf6N2E2_3899at 4533.760 kb on + strandat 4533.849 kb on + strandat 4533.850 kb on - strandat 4533.850 kb on - strandat 4533.850 kb on - strandat 4533.850 kb on - strandat 4533.860 kb on - strandat 4533.918 kb on + strandat 4533.918 kb on + strandat 4533.919 kb on - strandat 4533.919 kb on - strandat 4533.919 kb on - strandat 4533.921 kb on + strandat 4533.921 kb on + strandat 4533.936 kb on + strandat 4533.937 kb on - strandat 4533.937 kb on - strandat 4533.939 kb on + strandat 4533.962 kb on + strandat 4533.962 kb on + strandat 4534.010 kb on + strandat 4534.064 kb on + strandat 4534.065 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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4,531,405 + Pf6N2E2_3897 0.58 +0.3
4,531,406 - Pf6N2E2_3897 0.58 +0.4
4,531,406 - Pf6N2E2_3897 0.58 +0.4
4,531,406 - Pf6N2E2_3897 0.58 -0.3
4,531,458 + Pf6N2E2_3897 0.78 +1.1
4,531,458 + Pf6N2E2_3897 0.78 +0.9
4,531,459 - Pf6N2E2_3897 0.78 +1.3
4,531,459 - Pf6N2E2_3897 0.78 +0.4
4,531,459 - Pf6N2E2_3897 0.78 -0.0
4,531,459 - Pf6N2E2_3897 0.78 +0.6
4,531,459 - Pf6N2E2_3897 0.78 +0.7
4,531,515 + +0.1
4,531,519 + -0.1
4,531,520 - +1.5
4,531,529 + +0.9
4,531,731 + -0.0
4,531,731 + +0.5
4,531,731 + +0.4
4,531,731 + +0.4
4,531,796 + -0.5
4,531,861 + +0.4
4,531,862 - +0.6
4,532,107 + Pf6N2E2_3898 0.56 +0.2
4,532,108 - Pf6N2E2_3898 0.56 +0.3
4,532,122 + Pf6N2E2_3898 0.60 -1.0
4,532,123 - Pf6N2E2_3898 0.60 +0.2
4,532,123 - Pf6N2E2_3898 0.60 +0.2
4,532,182 - Pf6N2E2_3898 0.77 -0.6
4,532,182 - Pf6N2E2_3898 0.77 +1.9
4,532,209 + Pf6N2E2_3898 0.85 +0.0
4,532,209 + Pf6N2E2_3898 0.85 +0.2
4,532,209 + Pf6N2E2_3898 0.85 +0.4
4,532,209 + Pf6N2E2_3898 0.85 -0.5
4,532,209 + Pf6N2E2_3898 0.85 -0.2
4,532,209 + Pf6N2E2_3898 0.85 -0.1
4,532,210 - Pf6N2E2_3898 0.85 +0.7
4,532,210 - Pf6N2E2_3898 0.85 -0.6
4,532,210 - Pf6N2E2_3898 0.85 +0.1
4,532,210 - Pf6N2E2_3898 0.85 -0.0
4,532,239 - +0.1
4,532,267 + +0.6
4,532,268 - +1.7
4,532,268 - -1.0
4,532,331 + -2.8
4,532,331 + +0.3
4,532,331 + +0.2
4,532,331 + +0.6
4,532,331 + -0.4
4,532,332 - +1.0
4,532,332 - -0.1
4,532,332 - -0.0
4,532,332 - -1.1
4,532,646 + Pf6N2E2_3899 0.20 -0.9
4,532,799 + Pf6N2E2_3899 0.30 -0.1
4,532,800 - Pf6N2E2_3899 0.30 -0.9
4,533,102 + Pf6N2E2_3899 0.50 +0.1
4,533,480 + Pf6N2E2_3899 0.74 -0.1
4,533,480 + Pf6N2E2_3899 0.74 -0.5
4,533,480 + Pf6N2E2_3899 0.74 -2.5
4,533,481 - Pf6N2E2_3899 0.74 +0.1
4,533,481 - Pf6N2E2_3899 0.74 -0.1
4,533,481 - Pf6N2E2_3899 0.74 -0.5
4,533,481 - Pf6N2E2_3899 0.74 -1.4
4,533,559 - Pf6N2E2_3899 0.80 -2.1
4,533,559 - Pf6N2E2_3899 0.80 +1.9
4,533,578 + Pf6N2E2_3899 0.81 -1.8
4,533,579 - Pf6N2E2_3899 0.81 -0.6
4,533,579 - Pf6N2E2_3899 0.81 -0.9
4,533,579 - Pf6N2E2_3899 0.81 +0.0
4,533,579 - Pf6N2E2_3899 0.81 -0.4
4,533,579 - Pf6N2E2_3899 0.81 -0.3
4,533,579 - Pf6N2E2_3899 0.81 -0.3
4,533,618 + Pf6N2E2_3899 0.83 -0.9
4,533,618 + Pf6N2E2_3899 0.83 +0.6
4,533,618 + Pf6N2E2_3899 0.83 -1.4
4,533,619 - Pf6N2E2_3899 0.83 -0.9
4,533,619 - Pf6N2E2_3899 0.83 -0.9
4,533,760 + -1.0
4,533,849 + +1.0
4,533,850 - +0.1
4,533,850 - -0.4
4,533,850 - -0.4
4,533,850 - +0.1
4,533,860 - -0.4
4,533,918 + -0.9
4,533,918 + -0.9
4,533,919 - +0.2
4,533,919 - -0.6
4,533,919 - -0.8
4,533,921 + -1.4
4,533,921 + -1.8
4,533,936 + +0.0
4,533,937 - -1.8
4,533,937 - -1.7
4,533,939 + +0.4
4,533,962 + -1.3
4,533,962 + -1.8
4,534,010 + +0.4
4,534,064 + -0.0
4,534,065 - +0.9

Or see this region's nucleotide sequence