Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3601

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3600 and Pf6N2E2_3601 are separated by 291 nucleotidesPf6N2E2_3601 and Pf6N2E2_3602 are separated by 117 nucleotidesPf6N2E2_3602 and Pf6N2E2_3603 are separated by 18 nucleotides Pf6N2E2_3600 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 4,189,975 to 4,192,275 _3600 Pf6N2E2_3601 - Replicative DNA helicase (EC 3.6.1.-), at 4,192,567 to 4,193,964 _3601 Pf6N2E2_3602 - LSU ribosomal protein L9p, at 4,194,082 to 4,194,528 _3602 Pf6N2E2_3603 - FIG003573: hypothetical protein, at 4,194,547 to 4,195,437 _3603 Position (kb) 4192 4193 4194Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4191.590 kb on + strand, within Pf6N2E2_3600at 4191.713 kb on + strand, within Pf6N2E2_3600at 4191.773 kb on + strand, within Pf6N2E2_3600at 4191.774 kb on - strand, within Pf6N2E2_3600at 4191.779 kb on + strand, within Pf6N2E2_3600at 4191.780 kb on - strand, within Pf6N2E2_3600at 4191.839 kb on + strand, within Pf6N2E2_3600at 4191.839 kb on + strand, within Pf6N2E2_3600at 4191.839 kb on + strand, within Pf6N2E2_3600at 4191.839 kb on + strand, within Pf6N2E2_3600at 4191.840 kb on - strand, within Pf6N2E2_3600at 4191.840 kb on - strand, within Pf6N2E2_3600at 4191.840 kb on - strand, within Pf6N2E2_3600at 4191.840 kb on - strand, within Pf6N2E2_3600at 4191.862 kb on - strand, within Pf6N2E2_3600at 4191.862 kb on - strand, within Pf6N2E2_3600at 4191.863 kb on + strand, within Pf6N2E2_3600at 4191.863 kb on + strand, within Pf6N2E2_3600at 4191.863 kb on + strand, within Pf6N2E2_3600at 4191.864 kb on - strand, within Pf6N2E2_3600at 4191.914 kb on + strand, within Pf6N2E2_3600at 4191.950 kb on + strand, within Pf6N2E2_3600at 4192.130 kb on + strandat 4192.130 kb on + strandat 4192.131 kb on - strandat 4192.131 kb on - strandat 4192.238 kb on + strandat 4192.238 kb on + strandat 4192.238 kb on + strandat 4192.247 kb on + strandat 4192.290 kb on + strandat 4192.290 kb on + strandat 4192.291 kb on - strandat 4192.318 kb on + strandat 4192.320 kb on + strandat 4192.321 kb on - strandat 4192.321 kb on - strandat 4192.321 kb on - strandat 4192.321 kb on - strandat 4192.321 kb on - strandat 4192.321 kb on - strandat 4192.321 kb on - strandat 4192.397 kb on + strandat 4192.397 kb on + strandat 4192.398 kb on - strandat 4192.468 kb on + strandat 4192.469 kb on - strandat 4192.548 kb on - strandat 4192.568 kb on + strandat 4192.569 kb on - strandat 4192.589 kb on + strandat 4192.589 kb on + strandat 4192.589 kb on + strandat 4192.589 kb on + strandat 4192.590 kb on - strandat 4192.590 kb on - strandat 4194.083 kb on + strandat 4194.158 kb on - strand, within Pf6N2E2_3602at 4194.444 kb on - strand, within Pf6N2E2_3602at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.678 kb on - strand, within Pf6N2E2_3603at 4194.680 kb on - strand, within Pf6N2E2_3603at 4194.897 kb on - strand, within Pf6N2E2_3603at 4194.897 kb on - strand, within Pf6N2E2_3603at 4194.897 kb on - strand, within Pf6N2E2_3603

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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4,191,590 + Pf6N2E2_3600 0.70 -0.4
4,191,713 + Pf6N2E2_3600 0.76 -0.3
4,191,773 + Pf6N2E2_3600 0.78 -0.7
4,191,774 - Pf6N2E2_3600 0.78 -0.6
4,191,779 + Pf6N2E2_3600 0.78 +0.4
4,191,780 - Pf6N2E2_3600 0.78 +0.0
4,191,839 + Pf6N2E2_3600 0.81 +0.6
4,191,839 + Pf6N2E2_3600 0.81 -0.9
4,191,839 + Pf6N2E2_3600 0.81 -0.1
4,191,839 + Pf6N2E2_3600 0.81 +0.4
4,191,840 - Pf6N2E2_3600 0.81 +0.3
4,191,840 - Pf6N2E2_3600 0.81 +0.5
4,191,840 - Pf6N2E2_3600 0.81 +0.2
4,191,840 - Pf6N2E2_3600 0.81 +0.2
4,191,862 - Pf6N2E2_3600 0.82 +0.7
4,191,862 - Pf6N2E2_3600 0.82 +0.6
4,191,863 + Pf6N2E2_3600 0.82 +0.3
4,191,863 + Pf6N2E2_3600 0.82 -0.0
4,191,863 + Pf6N2E2_3600 0.82 +0.5
4,191,864 - Pf6N2E2_3600 0.82 +0.1
4,191,914 + Pf6N2E2_3600 0.84 +0.8
4,191,950 + Pf6N2E2_3600 0.86 -1.1
4,192,130 + +0.3
4,192,130 + +0.2
4,192,131 - +0.0
4,192,131 - +0.8
4,192,238 + -0.3
4,192,238 + -1.3
4,192,238 + +0.0
4,192,247 + +0.6
4,192,290 + -0.2
4,192,290 + -1.4
4,192,291 - +1.4
4,192,318 + +0.5
4,192,320 + -0.4
4,192,321 - +0.1
4,192,321 - +0.7
4,192,321 - +1.0
4,192,321 - +0.7
4,192,321 - -0.4
4,192,321 - -0.4
4,192,321 - -1.2
4,192,397 + +0.1
4,192,397 + +0.7
4,192,398 - -0.7
4,192,468 + +0.8
4,192,469 - +0.8
4,192,548 - +0.6
4,192,568 + -0.7
4,192,569 - -2.7
4,192,589 + -0.9
4,192,589 + +0.2
4,192,589 + +1.1
4,192,589 + -0.1
4,192,590 - -2.5
4,192,590 - +0.0
4,194,083 + -1.6
4,194,158 - Pf6N2E2_3602 0.17 -1.2
4,194,444 - Pf6N2E2_3602 0.81 -2.4
4,194,678 - Pf6N2E2_3603 0.15 +2.9
4,194,678 - Pf6N2E2_3603 0.15 +0.4
4,194,678 - Pf6N2E2_3603 0.15 -0.3
4,194,678 - Pf6N2E2_3603 0.15 +1.6
4,194,678 - Pf6N2E2_3603 0.15 +0.1
4,194,678 - Pf6N2E2_3603 0.15 -0.0
4,194,678 - Pf6N2E2_3603 0.15 +0.4
4,194,678 - Pf6N2E2_3603 0.15 -1.2
4,194,678 - Pf6N2E2_3603 0.15 -0.1
4,194,678 - Pf6N2E2_3603 0.15 +0.4
4,194,678 - Pf6N2E2_3603 0.15 +0.2
4,194,678 - Pf6N2E2_3603 0.15 +1.2
4,194,678 - Pf6N2E2_3603 0.15 +0.6
4,194,678 - Pf6N2E2_3603 0.15 -0.1
4,194,680 - Pf6N2E2_3603 0.15 -1.9
4,194,897 - Pf6N2E2_3603 0.39 -0.2
4,194,897 - Pf6N2E2_3603 0.39 -0.8
4,194,897 - Pf6N2E2_3603 0.39 -1.7

Or see this region's nucleotide sequence