Experiment: D-Cycloserine 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3600 and Pf6N2E2_3601 are separated by 291 nucleotides Pf6N2E2_3601 and Pf6N2E2_3602 are separated by 117 nucleotides Pf6N2E2_3602 and Pf6N2E2_3603 are separated by 18 nucleotides
Pf6N2E2_3600 - Fe-S OXIDOREDUCTASE (1.8.-.-), at 4,189,975 to 4,192,275
_3600
Pf6N2E2_3601 - Replicative DNA helicase (EC 3.6.1.-), at 4,192,567 to 4,193,964
_3601
Pf6N2E2_3602 - LSU ribosomal protein L9p, at 4,194,082 to 4,194,528
_3602
Pf6N2E2_3603 - FIG003573: hypothetical protein, at 4,194,547 to 4,195,437
_3603
Position (kb)
4192
4193
4194 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4191.590 kb on + strand, within Pf6N2E2_3600 at 4191.713 kb on + strand, within Pf6N2E2_3600 at 4191.773 kb on + strand, within Pf6N2E2_3600 at 4191.774 kb on - strand, within Pf6N2E2_3600 at 4191.779 kb on + strand, within Pf6N2E2_3600 at 4191.780 kb on - strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.839 kb on + strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.840 kb on - strand, within Pf6N2E2_3600 at 4191.862 kb on - strand, within Pf6N2E2_3600 at 4191.862 kb on - strand, within Pf6N2E2_3600 at 4191.863 kb on + strand, within Pf6N2E2_3600 at 4191.863 kb on + strand, within Pf6N2E2_3600 at 4191.863 kb on + strand, within Pf6N2E2_3600 at 4191.864 kb on - strand, within Pf6N2E2_3600 at 4191.914 kb on + strand, within Pf6N2E2_3600 at 4191.950 kb on + strand, within Pf6N2E2_3600 at 4192.130 kb on + strand at 4192.130 kb on + strand at 4192.131 kb on - strand at 4192.131 kb on - strand at 4192.238 kb on + strand at 4192.238 kb on + strand at 4192.238 kb on + strand at 4192.247 kb on + strand at 4192.290 kb on + strand at 4192.290 kb on + strand at 4192.291 kb on - strand at 4192.318 kb on + strand at 4192.320 kb on + strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.321 kb on - strand at 4192.397 kb on + strand at 4192.397 kb on + strand at 4192.398 kb on - strand at 4192.468 kb on + strand at 4192.469 kb on - strand at 4192.548 kb on - strand at 4192.568 kb on + strand at 4192.569 kb on - strand at 4192.589 kb on + strand at 4192.589 kb on + strand at 4192.589 kb on + strand at 4192.589 kb on + strand at 4192.590 kb on - strand at 4192.590 kb on - strand at 4194.083 kb on + strand at 4194.158 kb on - strand, within Pf6N2E2_3602 at 4194.444 kb on - strand, within Pf6N2E2_3602 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.678 kb on - strand, within Pf6N2E2_3603 at 4194.680 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603 at 4194.897 kb on - strand, within Pf6N2E2_3603
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml remove 4,191,590 + Pf6N2E2_3600 0.70 -0.4 4,191,713 + Pf6N2E2_3600 0.76 -0.3 4,191,773 + Pf6N2E2_3600 0.78 -0.7 4,191,774 - Pf6N2E2_3600 0.78 -0.6 4,191,779 + Pf6N2E2_3600 0.78 +0.4 4,191,780 - Pf6N2E2_3600 0.78 +0.0 4,191,839 + Pf6N2E2_3600 0.81 +0.6 4,191,839 + Pf6N2E2_3600 0.81 -0.9 4,191,839 + Pf6N2E2_3600 0.81 -0.1 4,191,839 + Pf6N2E2_3600 0.81 +0.4 4,191,840 - Pf6N2E2_3600 0.81 +0.3 4,191,840 - Pf6N2E2_3600 0.81 +0.5 4,191,840 - Pf6N2E2_3600 0.81 +0.2 4,191,840 - Pf6N2E2_3600 0.81 +0.2 4,191,862 - Pf6N2E2_3600 0.82 +0.7 4,191,862 - Pf6N2E2_3600 0.82 +0.6 4,191,863 + Pf6N2E2_3600 0.82 +0.3 4,191,863 + Pf6N2E2_3600 0.82 -0.0 4,191,863 + Pf6N2E2_3600 0.82 +0.5 4,191,864 - Pf6N2E2_3600 0.82 +0.1 4,191,914 + Pf6N2E2_3600 0.84 +0.8 4,191,950 + Pf6N2E2_3600 0.86 -1.1 4,192,130 + +0.3 4,192,130 + +0.2 4,192,131 - +0.0 4,192,131 - +0.8 4,192,238 + -0.3 4,192,238 + -1.3 4,192,238 + +0.0 4,192,247 + +0.6 4,192,290 + -0.2 4,192,290 + -1.4 4,192,291 - +1.4 4,192,318 + +0.5 4,192,320 + -0.4 4,192,321 - +0.1 4,192,321 - +0.7 4,192,321 - +1.0 4,192,321 - +0.7 4,192,321 - -0.4 4,192,321 - -0.4 4,192,321 - -1.2 4,192,397 + +0.1 4,192,397 + +0.7 4,192,398 - -0.7 4,192,468 + +0.8 4,192,469 - +0.8 4,192,548 - +0.6 4,192,568 + -0.7 4,192,569 - -2.7 4,192,589 + -0.9 4,192,589 + +0.2 4,192,589 + +1.1 4,192,589 + -0.1 4,192,590 - -2.5 4,192,590 - +0.0 4,194,083 + -1.6 4,194,158 - Pf6N2E2_3602 0.17 -1.2 4,194,444 - Pf6N2E2_3602 0.81 -2.4 4,194,678 - Pf6N2E2_3603 0.15 +2.9 4,194,678 - Pf6N2E2_3603 0.15 +0.4 4,194,678 - Pf6N2E2_3603 0.15 -0.3 4,194,678 - Pf6N2E2_3603 0.15 +1.6 4,194,678 - Pf6N2E2_3603 0.15 +0.1 4,194,678 - Pf6N2E2_3603 0.15 -0.0 4,194,678 - Pf6N2E2_3603 0.15 +0.4 4,194,678 - Pf6N2E2_3603 0.15 -1.2 4,194,678 - Pf6N2E2_3603 0.15 -0.1 4,194,678 - Pf6N2E2_3603 0.15 +0.4 4,194,678 - Pf6N2E2_3603 0.15 +0.2 4,194,678 - Pf6N2E2_3603 0.15 +1.2 4,194,678 - Pf6N2E2_3603 0.15 +0.6 4,194,678 - Pf6N2E2_3603 0.15 -0.1 4,194,680 - Pf6N2E2_3603 0.15 -1.9 4,194,897 - Pf6N2E2_3603 0.39 -0.2 4,194,897 - Pf6N2E2_3603 0.39 -0.8 4,194,897 - Pf6N2E2_3603 0.39 -1.7
Or see this region's nucleotide sequence