Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_341

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_339 and Pf6N2E2_340 are separated by 1 nucleotidesPf6N2E2_340 and Pf6N2E2_341 are separated by 177 nucleotidesPf6N2E2_341 and Pf6N2E2_342 overlap by 4 nucleotides Pf6N2E2_339 - Glutathione-regulated potassium-efflux system protein KefC, at 405,517 to 407,343 _339 Pf6N2E2_340 - Glutathione-regulated potassium-efflux system ancillary protein KefF, at 407,345 to 407,866 _340 Pf6N2E2_341 - sensor histidine kinase, at 408,044 to 409,390 _341 Pf6N2E2_342 - DNA-binding response regulator, at 409,387 to 410,097 _342 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1 2at 407.188 kb on + strandat 407.189 kb on - strandat 407.189 kb on - strandat 407.239 kb on + strandat 407.240 kb on - strandat 407.240 kb on - strandat 407.240 kb on - strandat 407.240 kb on - strandat 407.240 kb on - strandat 407.243 kb on + strandat 407.244 kb on - strandat 407.309 kb on + strandat 407.309 kb on + strandat 407.309 kb on + strandat 407.310 kb on - strandat 407.310 kb on - strandat 407.310 kb on - strandat 407.379 kb on + strandat 407.379 kb on + strandat 407.380 kb on - strandat 407.380 kb on - strandat 407.380 kb on - strandat 407.380 kb on - strandat 407.380 kb on - strandat 407.421 kb on + strand, within Pf6N2E2_340at 407.421 kb on + strand, within Pf6N2E2_340at 407.466 kb on + strand, within Pf6N2E2_340at 407.466 kb on + strand, within Pf6N2E2_340at 407.466 kb on + strand, within Pf6N2E2_340at 407.664 kb on + strand, within Pf6N2E2_340at 407.670 kb on + strand, within Pf6N2E2_340at 407.670 kb on + strand, within Pf6N2E2_340at 407.670 kb on + strand, within Pf6N2E2_340at 407.752 kb on - strand, within Pf6N2E2_340at 407.760 kb on + strand, within Pf6N2E2_340at 407.771 kb on + strand, within Pf6N2E2_340at 407.771 kb on + strand, within Pf6N2E2_340at 407.771 kb on + strand, within Pf6N2E2_340at 407.772 kb on - strand, within Pf6N2E2_340at 407.772 kb on - strand, within Pf6N2E2_340at 407.772 kb on - strand, within Pf6N2E2_340at 407.838 kb on + strandat 407.838 kb on + strandat 407.850 kb on + strandat 407.851 kb on - strandat 407.851 kb on - strandat 407.940 kb on + strandat 408.018 kb on + strandat 408.316 kb on - strand, within Pf6N2E2_341at 408.316 kb on - strand, within Pf6N2E2_341at 408.316 kb on - strand, within Pf6N2E2_341at 408.378 kb on + strand, within Pf6N2E2_341at 408.378 kb on + strand, within Pf6N2E2_341at 408.668 kb on + strand, within Pf6N2E2_341at 409.011 kb on + strand, within Pf6N2E2_341at 409.012 kb on - strand, within Pf6N2E2_341at 409.805 kb on + strand, within Pf6N2E2_342at 410.086 kb on + strandat 410.087 kb on - strandat 410.087 kb on - strandat 410.087 kb on - strandat 410.120 kb on + strandat 410.121 kb on - strandat 410.135 kb on + strandat 410.135 kb on + strandat 410.135 kb on + strandat 410.136 kb on - strandat 410.160 kb on + strandat 410.161 kb on - strandat 410.162 kb on + strandat 410.162 kb on + strandat 410.162 kb on + strandat 410.163 kb on - strandat 410.178 kb on + strandat 410.179 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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407,188 + +2.1
407,189 - -0.5
407,189 - -0.4
407,239 + +0.9
407,240 - -1.0
407,240 - +0.2
407,240 - +0.2
407,240 - +0.4
407,240 - -0.4
407,243 + +0.0
407,244 - -1.8
407,309 + +0.0
407,309 + +1.2
407,309 + -0.3
407,310 - +1.1
407,310 - +1.0
407,310 - +0.3
407,379 + -0.2
407,379 + +0.7
407,380 - -0.2
407,380 - -1.2
407,380 - +0.7
407,380 - +0.6
407,380 - +1.6
407,421 + Pf6N2E2_340 0.15 -0.2
407,421 + Pf6N2E2_340 0.15 -0.0
407,466 + Pf6N2E2_340 0.23 +0.4
407,466 + Pf6N2E2_340 0.23 -0.2
407,466 + Pf6N2E2_340 0.23 +0.9
407,664 + Pf6N2E2_340 0.61 +0.4
407,670 + Pf6N2E2_340 0.62 -0.8
407,670 + Pf6N2E2_340 0.62 +0.4
407,670 + Pf6N2E2_340 0.62 +0.4
407,752 - Pf6N2E2_340 0.78 +1.2
407,760 + Pf6N2E2_340 0.80 +0.9
407,771 + Pf6N2E2_340 0.82 +0.3
407,771 + Pf6N2E2_340 0.82 +0.4
407,771 + Pf6N2E2_340 0.82 -0.8
407,772 - Pf6N2E2_340 0.82 +0.5
407,772 - Pf6N2E2_340 0.82 +1.1
407,772 - Pf6N2E2_340 0.82 -0.5
407,838 + +0.7
407,838 + -0.4
407,850 + +1.9
407,851 - +0.6
407,851 - -0.8
407,940 + +0.8
408,018 + -0.2
408,316 - Pf6N2E2_341 0.20 +0.0
408,316 - Pf6N2E2_341 0.20 +1.1
408,316 - Pf6N2E2_341 0.20 -1.3
408,378 + Pf6N2E2_341 0.25 +0.4
408,378 + Pf6N2E2_341 0.25 -1.2
408,668 + Pf6N2E2_341 0.46 -0.2
409,011 + Pf6N2E2_341 0.72 -0.1
409,012 - Pf6N2E2_341 0.72 -2.2
409,805 + Pf6N2E2_342 0.59 +0.6
410,086 + -0.1
410,087 - +1.7
410,087 - -0.7
410,087 - -0.4
410,120 + +0.6
410,121 - -0.4
410,135 + -0.6
410,135 + +0.1
410,135 + +0.7
410,136 - -0.2
410,160 + +0.1
410,161 - -0.2
410,162 + +1.2
410,162 + +0.9
410,162 + -0.7
410,163 - -0.2
410,178 + +1.1
410,179 - +1.0

Or see this region's nucleotide sequence