Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3168

Experiment: D-Cycloserine 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3167 and Pf6N2E2_3168 are separated by 209 nucleotidesPf6N2E2_3168 and Pf6N2E2_3169 are separated by 3 nucleotides Pf6N2E2_3167 - putative membrane protein, at 3,661,503 to 3,662,270 _3167 Pf6N2E2_3168 - Exodeoxyribonuclease VII large subunit (EC 3.1.11.6), at 3,662,480 to 3,663,868 _3168 Pf6N2E2_3169 - Membrane proteins related to metalloendopeptidases, at 3,663,872 to 3,664,693 _3169 Position (kb) 3662 3663 3664Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3661.484 kb on - strandat 3661.484 kb on - strandat 3661.484 kb on - strandat 3661.516 kb on + strandat 3661.517 kb on - strandat 3661.668 kb on + strand, within Pf6N2E2_3167at 3661.669 kb on - strand, within Pf6N2E2_3167at 3661.669 kb on - strand, within Pf6N2E2_3167at 3661.679 kb on - strand, within Pf6N2E2_3167at 3661.679 kb on - strand, within Pf6N2E2_3167at 3661.695 kb on - strand, within Pf6N2E2_3167at 3661.783 kb on + strand, within Pf6N2E2_3167at 3661.783 kb on + strand, within Pf6N2E2_3167at 3661.784 kb on - strand, within Pf6N2E2_3167at 3661.784 kb on - strand, within Pf6N2E2_3167at 3661.784 kb on - strand, within Pf6N2E2_3167at 3661.784 kb on - strand, within Pf6N2E2_3167at 3661.792 kb on + strand, within Pf6N2E2_3167at 3661.792 kb on + strand, within Pf6N2E2_3167at 3661.794 kb on + strand, within Pf6N2E2_3167at 3661.794 kb on + strand, within Pf6N2E2_3167at 3661.794 kb on + strand, within Pf6N2E2_3167at 3661.794 kb on + strand, within Pf6N2E2_3167at 3661.794 kb on + strand, within Pf6N2E2_3167at 3661.795 kb on - strand, within Pf6N2E2_3167at 3661.795 kb on - strand, within Pf6N2E2_3167at 3661.903 kb on + strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.904 kb on - strand, within Pf6N2E2_3167at 3661.912 kb on + strand, within Pf6N2E2_3167at 3662.188 kb on + strand, within Pf6N2E2_3167at 3662.188 kb on + strand, within Pf6N2E2_3167at 3662.188 kb on + strand, within Pf6N2E2_3167at 3662.188 kb on + strand, within Pf6N2E2_3167at 3662.189 kb on - strand, within Pf6N2E2_3167at 3662.189 kb on - strand, within Pf6N2E2_3167at 3662.189 kb on - strand, within Pf6N2E2_3167at 3662.324 kb on + strandat 3662.324 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.399 kb on + strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.400 kb on - strandat 3662.445 kb on + strandat 3662.445 kb on + strandat 3662.445 kb on + strandat 3662.445 kb on + strandat 3662.445 kb on + strandat 3662.446 kb on - strandat 3662.446 kb on - strandat 3662.446 kb on - strandat 3662.446 kb on - strandat 3662.477 kb on - strandat 3662.477 kb on - strandat 3662.494 kb on + strandat 3662.495 kb on - strandat 3662.648 kb on + strand, within Pf6N2E2_3168at 3662.648 kb on + strand, within Pf6N2E2_3168at 3662.648 kb on + strand, within Pf6N2E2_3168at 3662.648 kb on + strand, within Pf6N2E2_3168at 3662.648 kb on + strand, within Pf6N2E2_3168at 3662.648 kb on + strand, within Pf6N2E2_3168at 3662.649 kb on - strand, within Pf6N2E2_3168at 3662.649 kb on - strand, within Pf6N2E2_3168at 3662.679 kb on + strand, within Pf6N2E2_3168at 3662.679 kb on + strand, within Pf6N2E2_3168at 3662.679 kb on + strand, within Pf6N2E2_3168at 3662.679 kb on + strand, within Pf6N2E2_3168at 3662.680 kb on - strand, within Pf6N2E2_3168at 3662.680 kb on - strand, within Pf6N2E2_3168at 3663.256 kb on - strand, within Pf6N2E2_3168at 3663.503 kb on - strand, within Pf6N2E2_3168at 3663.576 kb on + strand, within Pf6N2E2_3168at 3663.714 kb on - strand, within Pf6N2E2_3168at 3663.817 kb on - strandat 3663.859 kb on - strandat 3663.891 kb on + strandat 3663.892 kb on - strandat 3663.935 kb on + strandat 3663.935 kb on + strandat 3663.935 kb on + strandat 3663.935 kb on + strandat 3663.935 kb on + strandat 3663.936 kb on - strandat 3663.936 kb on - strandat 3663.936 kb on - strandat 3663.936 kb on - strandat 3663.936 kb on - strandat 3664.022 kb on + strand, within Pf6N2E2_3169at 3664.163 kb on + strand, within Pf6N2E2_3169at 3664.164 kb on - strand, within Pf6N2E2_3169at 3664.460 kb on - strand, within Pf6N2E2_3169at 3664.460 kb on - strand, within Pf6N2E2_3169at 3664.463 kb on + strand, within Pf6N2E2_3169at 3664.463 kb on + strand, within Pf6N2E2_3169at 3664.463 kb on + strand, within Pf6N2E2_3169at 3664.463 kb on + strand, within Pf6N2E2_3169at 3664.463 kb on + strand, within Pf6N2E2_3169at 3664.464 kb on - strand, within Pf6N2E2_3169at 3664.464 kb on - strand, within Pf6N2E2_3169at 3664.464 kb on - strand, within Pf6N2E2_3169at 3664.464 kb on - strand, within Pf6N2E2_3169at 3664.464 kb on - strand, within Pf6N2E2_3169at 3664.748 kb on - strandat 3664.776 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.12 mg/ml
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3,661,484 - +0.3
3,661,484 - -0.2
3,661,484 - -0.3
3,661,516 + +1.8
3,661,517 - +0.2
3,661,668 + Pf6N2E2_3167 0.21 -1.0
3,661,669 - Pf6N2E2_3167 0.22 +0.5
3,661,669 - Pf6N2E2_3167 0.22 -0.5
3,661,679 - Pf6N2E2_3167 0.23 -1.5
3,661,679 - Pf6N2E2_3167 0.23 +0.4
3,661,695 - Pf6N2E2_3167 0.25 -0.1
3,661,783 + Pf6N2E2_3167 0.36 +1.1
3,661,783 + Pf6N2E2_3167 0.36 -0.1
3,661,784 - Pf6N2E2_3167 0.37 +0.0
3,661,784 - Pf6N2E2_3167 0.37 -0.8
3,661,784 - Pf6N2E2_3167 0.37 +1.2
3,661,784 - Pf6N2E2_3167 0.37 +0.3
3,661,792 + Pf6N2E2_3167 0.38 +0.8
3,661,792 + Pf6N2E2_3167 0.38 +0.4
3,661,794 + Pf6N2E2_3167 0.38 -1.8
3,661,794 + Pf6N2E2_3167 0.38 -0.6
3,661,794 + Pf6N2E2_3167 0.38 -0.1
3,661,794 + Pf6N2E2_3167 0.38 -0.6
3,661,794 + Pf6N2E2_3167 0.38 +0.8
3,661,795 - Pf6N2E2_3167 0.38 -0.4
3,661,795 - Pf6N2E2_3167 0.38 +0.7
3,661,903 + Pf6N2E2_3167 0.52 +0.5
3,661,904 - Pf6N2E2_3167 0.52 -0.7
3,661,904 - Pf6N2E2_3167 0.52 -0.2
3,661,904 - Pf6N2E2_3167 0.52 +0.9
3,661,904 - Pf6N2E2_3167 0.52 -0.2
3,661,904 - Pf6N2E2_3167 0.52 +0.1
3,661,904 - Pf6N2E2_3167 0.52 +0.2
3,661,904 - Pf6N2E2_3167 0.52 -0.4
3,661,912 + Pf6N2E2_3167 0.53 -0.2
3,662,188 + Pf6N2E2_3167 0.89 -0.2
3,662,188 + Pf6N2E2_3167 0.89 +0.6
3,662,188 + Pf6N2E2_3167 0.89 +0.2
3,662,188 + Pf6N2E2_3167 0.89 +1.1
3,662,189 - Pf6N2E2_3167 0.89 +1.4
3,662,189 - Pf6N2E2_3167 0.89 +0.2
3,662,189 - Pf6N2E2_3167 0.89 -0.4
3,662,324 + +0.9
3,662,324 + -0.1
3,662,399 + +0.3
3,662,399 + -0.9
3,662,399 + -0.5
3,662,399 + +1.0
3,662,399 + -0.4
3,662,399 + +0.5
3,662,399 + +1.7
3,662,399 + +0.7
3,662,399 + +0.3
3,662,399 + +1.0
3,662,400 - +1.4
3,662,400 - -1.1
3,662,400 - -0.9
3,662,400 - -0.4
3,662,400 - -1.4
3,662,400 - -0.3
3,662,400 - +0.5
3,662,400 - +0.3
3,662,400 - -0.0
3,662,400 - +0.2
3,662,400 - +0.0
3,662,400 - -1.4
3,662,445 + -2.2
3,662,445 + +0.9
3,662,445 + -0.4
3,662,445 + +1.3
3,662,445 + +1.5
3,662,446 - +0.5
3,662,446 - +0.5
3,662,446 - -0.2
3,662,446 - +0.2
3,662,477 - +0.2
3,662,477 - +1.1
3,662,494 + +0.5
3,662,495 - -0.9
3,662,648 + Pf6N2E2_3168 0.12 -1.3
3,662,648 + Pf6N2E2_3168 0.12 +0.7
3,662,648 + Pf6N2E2_3168 0.12 -0.5
3,662,648 + Pf6N2E2_3168 0.12 -0.7
3,662,648 + Pf6N2E2_3168 0.12 +0.6
3,662,648 + Pf6N2E2_3168 0.12 -1.4
3,662,649 - Pf6N2E2_3168 0.12 -1.9
3,662,649 - Pf6N2E2_3168 0.12 -2.8
3,662,679 + Pf6N2E2_3168 0.14 -2.4
3,662,679 + Pf6N2E2_3168 0.14 -0.5
3,662,679 + Pf6N2E2_3168 0.14 -0.5
3,662,679 + Pf6N2E2_3168 0.14 -0.1
3,662,680 - Pf6N2E2_3168 0.14 +0.2
3,662,680 - Pf6N2E2_3168 0.14 -2.0
3,663,256 - Pf6N2E2_3168 0.56 -0.7
3,663,503 - Pf6N2E2_3168 0.74 -3.1
3,663,576 + Pf6N2E2_3168 0.79 +0.4
3,663,714 - Pf6N2E2_3168 0.89 -1.4
3,663,817 - -1.3
3,663,859 - -0.1
3,663,891 + +0.5
3,663,892 - -0.2
3,663,935 + +0.9
3,663,935 + +0.7
3,663,935 + -0.6
3,663,935 + +0.6
3,663,935 + +0.6
3,663,936 - -1.4
3,663,936 - +1.0
3,663,936 - +0.9
3,663,936 - +0.4
3,663,936 - -0.3
3,664,022 + Pf6N2E2_3169 0.18 +0.5
3,664,163 + Pf6N2E2_3169 0.35 -0.2
3,664,164 - Pf6N2E2_3169 0.36 +0.4
3,664,460 - Pf6N2E2_3169 0.72 +1.8
3,664,460 - Pf6N2E2_3169 0.72 +1.6
3,664,463 + Pf6N2E2_3169 0.72 -0.5
3,664,463 + Pf6N2E2_3169 0.72 +0.4
3,664,463 + Pf6N2E2_3169 0.72 +0.1
3,664,463 + Pf6N2E2_3169 0.72 -0.8
3,664,463 + Pf6N2E2_3169 0.72 -1.1
3,664,464 - Pf6N2E2_3169 0.72 -0.5
3,664,464 - Pf6N2E2_3169 0.72 -0.1
3,664,464 - Pf6N2E2_3169 0.72 +0.8
3,664,464 - Pf6N2E2_3169 0.72 +0.2
3,664,464 - Pf6N2E2_3169 0.72 +0.1
3,664,748 - -0.5
3,664,776 - -0.7

Or see this region's nucleotide sequence