Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05803 and H281DRAFT_05804 are separated by 6 nucleotides H281DRAFT_05804 and H281DRAFT_05805 are separated by 0 nucleotides H281DRAFT_05805 and H281DRAFT_05806 overlap by 4 nucleotides
H281DRAFT_05803: H281DRAFT_05803 - dipeptide transport system permease protein, at 79,113 to 80,123
_05803
H281DRAFT_05804: H281DRAFT_05804 - dipeptide transport system permease protein, at 80,130 to 81,047
_05804
H281DRAFT_05805: H281DRAFT_05805 - dipeptide transport system ATP-binding protein, at 81,048 to 82,052
_05805
H281DRAFT_05806: H281DRAFT_05806 - dipeptide transport system ATP-binding protein, at 82,049 to 83,068
_05806
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 80.115 kb on - strand at 80.265 kb on - strand, within H281DRAFT_05804 at 80.531 kb on + strand, within H281DRAFT_05804 at 80.665 kb on - strand, within H281DRAFT_05804 at 80.712 kb on + strand, within H281DRAFT_05804 at 80.712 kb on + strand, within H281DRAFT_05804 at 80.713 kb on - strand, within H281DRAFT_05804 at 80.713 kb on - strand, within H281DRAFT_05804 at 81.058 kb on + strand at 81.059 kb on - strand at 81.059 kb on - strand at 81.098 kb on - strand at 81.308 kb on + strand, within H281DRAFT_05805 at 81.309 kb on - strand, within H281DRAFT_05805 at 81.354 kb on + strand, within H281DRAFT_05805 at 81.366 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.720 kb on + strand, within H281DRAFT_05805 at 81.721 kb on - strand, within H281DRAFT_05805 at 81.721 kb on - strand, within H281DRAFT_05805 at 81.721 kb on - strand, within H281DRAFT_05805 at 81.721 kb on - strand, within H281DRAFT_05805 at 81.912 kb on + strand, within H281DRAFT_05805 at 81.912 kb on + strand, within H281DRAFT_05805 at 81.912 kb on + strand, within H281DRAFT_05805 at 81.912 kb on + strand, within H281DRAFT_05805 at 81.913 kb on - strand, within H281DRAFT_05805 at 81.913 kb on - strand, within H281DRAFT_05805 at 82.131 kb on - strand at 82.465 kb on - strand, within H281DRAFT_05806 at 82.543 kb on + strand, within H281DRAFT_05806 at 82.543 kb on + strand, within H281DRAFT_05806 at 82.544 kb on - strand, within H281DRAFT_05806 at 82.644 kb on + strand, within H281DRAFT_05806 at 82.706 kb on + strand, within H281DRAFT_05806 at 82.706 kb on + strand, within H281DRAFT_05806 at 82.706 kb on + strand, within H281DRAFT_05806 at 82.707 kb on - strand, within H281DRAFT_05806 at 82.707 kb on - strand, within H281DRAFT_05806 at 82.707 kb on - strand, within H281DRAFT_05806 at 82.707 kb on - strand, within H281DRAFT_05806 at 82.744 kb on + strand, within H281DRAFT_05806 at 82.745 kb on - strand, within H281DRAFT_05806 at 82.769 kb on + strand, within H281DRAFT_05806 at 82.770 kb on - strand, within H281DRAFT_05806 at 82.770 kb on - strand, within H281DRAFT_05806 at 82.770 kb on - strand, within H281DRAFT_05806 at 82.770 kb on - strand, within H281DRAFT_05806 at 82.833 kb on - strand, within H281DRAFT_05806 at 82.965 kb on - strand, within H281DRAFT_05806
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 80,115 - -0.5 80,265 - H281DRAFT_05804 0.15 +2.0 80,531 + H281DRAFT_05804 0.44 -0.1 80,665 - H281DRAFT_05804 0.58 -1.6 80,712 + H281DRAFT_05804 0.63 -0.4 80,712 + H281DRAFT_05804 0.63 +0.6 80,713 - H281DRAFT_05804 0.64 -0.2 80,713 - H281DRAFT_05804 0.64 +0.3 81,058 + +0.0 81,059 - +0.5 81,059 - -0.3 81,098 - -0.0 81,308 + H281DRAFT_05805 0.26 -0.6 81,309 - H281DRAFT_05805 0.26 +0.0 81,354 + H281DRAFT_05805 0.30 +0.2 81,366 + H281DRAFT_05805 0.32 -0.7 81,720 + H281DRAFT_05805 0.67 -2.0 81,720 + H281DRAFT_05805 0.67 -0.4 81,720 + H281DRAFT_05805 0.67 +0.5 81,720 + H281DRAFT_05805 0.67 +0.7 81,720 + H281DRAFT_05805 0.67 +0.7 81,720 + H281DRAFT_05805 0.67 -0.7 81,720 + H281DRAFT_05805 0.67 -0.3 81,721 - H281DRAFT_05805 0.67 -0.2 81,721 - H281DRAFT_05805 0.67 +0.2 81,721 - H281DRAFT_05805 0.67 -2.9 81,721 - H281DRAFT_05805 0.67 +1.2 81,912 + H281DRAFT_05805 0.86 +1.1 81,912 + H281DRAFT_05805 0.86 +0.4 81,912 + H281DRAFT_05805 0.86 -0.1 81,912 + H281DRAFT_05805 0.86 -0.4 81,913 - H281DRAFT_05805 0.86 +0.4 81,913 - H281DRAFT_05805 0.86 +0.2 82,131 - -0.7 82,465 - H281DRAFT_05806 0.41 -0.5 82,543 + H281DRAFT_05806 0.48 -0.4 82,543 + H281DRAFT_05806 0.48 +1.0 82,544 - H281DRAFT_05806 0.49 +1.4 82,644 + H281DRAFT_05806 0.58 +1.9 82,706 + H281DRAFT_05806 0.64 -0.3 82,706 + H281DRAFT_05806 0.64 +0.0 82,706 + H281DRAFT_05806 0.64 +2.6 82,707 - H281DRAFT_05806 0.65 -0.9 82,707 - H281DRAFT_05806 0.65 -0.4 82,707 - H281DRAFT_05806 0.65 -0.7 82,707 - H281DRAFT_05806 0.65 -0.3 82,744 + H281DRAFT_05806 0.68 +0.1 82,745 - H281DRAFT_05806 0.68 +3.0 82,769 + H281DRAFT_05806 0.71 -1.0 82,770 - H281DRAFT_05806 0.71 -0.5 82,770 - H281DRAFT_05806 0.71 -2.5 82,770 - H281DRAFT_05806 0.71 -1.5 82,770 - H281DRAFT_05806 0.71 +0.4 82,833 - H281DRAFT_05806 0.77 +0.5 82,965 - H281DRAFT_05806 0.90 +0.3
Or see this region's nucleotide sequence