Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05803

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05802 and H281DRAFT_05803 are separated by 150 nucleotidesH281DRAFT_05803 and H281DRAFT_05804 are separated by 6 nucleotidesH281DRAFT_05804 and H281DRAFT_05805 are separated by 0 nucleotides H281DRAFT_05802: H281DRAFT_05802 - dipeptide transport system substrate-binding protein, at 77,334 to 78,962 _05802 H281DRAFT_05803: H281DRAFT_05803 - dipeptide transport system permease protein, at 79,113 to 80,123 _05803 H281DRAFT_05804: H281DRAFT_05804 - dipeptide transport system permease protein, at 80,130 to 81,047 _05804 H281DRAFT_05805: H281DRAFT_05805 - dipeptide transport system ATP-binding protein, at 81,048 to 82,052 _05805 Position (kb) 79 80 81Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 78.157 kb on - strand, within H281DRAFT_05802at 78.157 kb on - strand, within H281DRAFT_05802at 78.238 kb on - strand, within H281DRAFT_05802at 78.246 kb on + strand, within H281DRAFT_05802at 78.336 kb on + strand, within H281DRAFT_05802at 78.336 kb on + strand, within H281DRAFT_05802at 78.336 kb on + strand, within H281DRAFT_05802at 78.390 kb on + strand, within H281DRAFT_05802at 78.390 kb on + strand, within H281DRAFT_05802at 78.391 kb on - strand, within H281DRAFT_05802at 78.391 kb on - strand, within H281DRAFT_05802at 78.391 kb on - strand, within H281DRAFT_05802at 78.418 kb on - strand, within H281DRAFT_05802at 78.429 kb on - strand, within H281DRAFT_05802at 78.510 kb on + strand, within H281DRAFT_05802at 78.510 kb on + strand, within H281DRAFT_05802at 78.591 kb on + strand, within H281DRAFT_05802at 78.591 kb on + strand, within H281DRAFT_05802at 78.591 kb on + strand, within H281DRAFT_05802at 78.592 kb on - strand, within H281DRAFT_05802at 78.592 kb on - strand, within H281DRAFT_05802at 78.607 kb on - strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.745 kb on - strand, within H281DRAFT_05802at 78.814 kb on - strandat 78.814 kb on - strandat 78.879 kb on + strandat 78.961 kb on - strandat 79.005 kb on + strandat 79.005 kb on + strandat 79.006 kb on - strandat 79.308 kb on + strand, within H281DRAFT_05803at 79.308 kb on + strand, within H281DRAFT_05803at 79.309 kb on - strand, within H281DRAFT_05803at 79.309 kb on - strand, within H281DRAFT_05803at 79.629 kb on + strand, within H281DRAFT_05803at 79.629 kb on + strand, within H281DRAFT_05803at 79.630 kb on - strand, within H281DRAFT_05803at 79.809 kb on + strand, within H281DRAFT_05803at 79.809 kb on + strand, within H281DRAFT_05803at 79.810 kb on - strand, within H281DRAFT_05803at 79.810 kb on - strand, within H281DRAFT_05803at 79.939 kb on + strand, within H281DRAFT_05803at 80.115 kb on - strandat 80.265 kb on - strand, within H281DRAFT_05804at 80.531 kb on + strand, within H281DRAFT_05804at 80.665 kb on - strand, within H281DRAFT_05804at 80.712 kb on + strand, within H281DRAFT_05804at 80.712 kb on + strand, within H281DRAFT_05804at 80.713 kb on - strand, within H281DRAFT_05804at 80.713 kb on - strand, within H281DRAFT_05804at 81.058 kb on + strandat 81.059 kb on - strandat 81.059 kb on - strandat 81.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
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78,157 - H281DRAFT_05802 0.51 -1.7
78,157 - H281DRAFT_05802 0.51 -0.4
78,238 - H281DRAFT_05802 0.55 +0.9
78,246 + H281DRAFT_05802 0.56 -0.2
78,336 + H281DRAFT_05802 0.62 +2.6
78,336 + H281DRAFT_05802 0.62 -0.8
78,336 + H281DRAFT_05802 0.62 -1.7
78,390 + H281DRAFT_05802 0.65 -0.5
78,390 + H281DRAFT_05802 0.65 -0.5
78,391 - H281DRAFT_05802 0.65 -0.2
78,391 - H281DRAFT_05802 0.65 -0.6
78,391 - H281DRAFT_05802 0.65 -0.3
78,418 - H281DRAFT_05802 0.67 +0.3
78,429 - H281DRAFT_05802 0.67 -0.5
78,510 + H281DRAFT_05802 0.72 -0.6
78,510 + H281DRAFT_05802 0.72 +0.3
78,591 + H281DRAFT_05802 0.77 +0.8
78,591 + H281DRAFT_05802 0.77 -0.0
78,591 + H281DRAFT_05802 0.77 +0.2
78,592 - H281DRAFT_05802 0.77 -0.3
78,592 - H281DRAFT_05802 0.77 -1.8
78,607 - H281DRAFT_05802 0.78 +0.7
78,744 + H281DRAFT_05802 0.87 -0.5
78,744 + H281DRAFT_05802 0.87 -0.7
78,744 + H281DRAFT_05802 0.87 -0.2
78,744 + H281DRAFT_05802 0.87 -0.2
78,744 + H281DRAFT_05802 0.87 +0.0
78,744 + H281DRAFT_05802 0.87 -1.0
78,744 + H281DRAFT_05802 0.87 +0.8
78,744 + H281DRAFT_05802 0.87 +0.7
78,745 - H281DRAFT_05802 0.87 -0.6
78,814 - +0.2
78,814 - -0.2
78,879 + -0.7
78,961 - -0.4
79,005 + +0.2
79,005 + +0.6
79,006 - -1.4
79,308 + H281DRAFT_05803 0.19 -0.7
79,308 + H281DRAFT_05803 0.19 -0.3
79,309 - H281DRAFT_05803 0.19 -1.9
79,309 - H281DRAFT_05803 0.19 +0.0
79,629 + H281DRAFT_05803 0.51 -0.5
79,629 + H281DRAFT_05803 0.51 -0.4
79,630 - H281DRAFT_05803 0.51 -0.5
79,809 + H281DRAFT_05803 0.69 -0.5
79,809 + H281DRAFT_05803 0.69 -0.0
79,810 - H281DRAFT_05803 0.69 -3.0
79,810 - H281DRAFT_05803 0.69 -0.2
79,939 + H281DRAFT_05803 0.82 -1.5
80,115 - -0.5
80,265 - H281DRAFT_05804 0.15 +2.0
80,531 + H281DRAFT_05804 0.44 -0.1
80,665 - H281DRAFT_05804 0.58 -1.6
80,712 + H281DRAFT_05804 0.63 -0.4
80,712 + H281DRAFT_05804 0.63 +0.6
80,713 - H281DRAFT_05804 0.64 -0.2
80,713 - H281DRAFT_05804 0.64 +0.3
81,058 + +0.0
81,059 - +0.5
81,059 - -0.3
81,098 - -0.0

Or see this region's nucleotide sequence