Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05438 and H281DRAFT_05439 are separated by 30 nucleotides H281DRAFT_05439 and H281DRAFT_05440 are separated by 146 nucleotides
H281DRAFT_05438: H281DRAFT_05438 - transcriptional regulator, IclR family, at 16,927 to 17,739
_05438
H281DRAFT_05439: H281DRAFT_05439 - Catechol 2,3-dioxygenase, at 17,770 to 18,468
_05439
H281DRAFT_05440: H281DRAFT_05440 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 18,615 to 19,466
_05440
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1
2
3 at 16.817 kb on + strand at 16.915 kb on + strand at 16.915 kb on + strand at 16.915 kb on + strand at 16.916 kb on - strand at 17.277 kb on - strand, within H281DRAFT_05438 at 17.548 kb on + strand, within H281DRAFT_05438 at 17.710 kb on + strand at 17.710 kb on + strand at 17.711 kb on - strand at 17.711 kb on - strand at 18.054 kb on - strand, within H281DRAFT_05439 at 18.413 kb on + strand at 18.413 kb on + strand at 18.413 kb on + strand at 18.424 kb on - strand at 18.431 kb on - strand at 18.482 kb on - strand at 18.487 kb on + strand at 18.700 kb on + strand at 18.711 kb on + strand, within H281DRAFT_05440 at 18.780 kb on - strand, within H281DRAFT_05440 at 18.790 kb on - strand, within H281DRAFT_05440 at 18.861 kb on + strand, within H281DRAFT_05440 at 18.862 kb on - strand, within H281DRAFT_05440 at 19.071 kb on + strand, within H281DRAFT_05440 at 19.081 kb on - strand, within H281DRAFT_05440 at 19.146 kb on + strand, within H281DRAFT_05440 at 19.146 kb on + strand at 19.465 kb on - strand at 19.465 kb on - strand at 19.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 16,817 + -0.8 16,915 + +0.6 16,915 + +0.1 16,915 + +0.2 16,916 - +0.2 17,277 - H281DRAFT_05438 0.43 +1.0 17,548 + H281DRAFT_05438 0.76 +0.2 17,710 + -0.2 17,710 + +0.1 17,711 - -0.4 17,711 - +0.2 18,054 - H281DRAFT_05439 0.41 +0.8 18,413 + -0.2 18,413 + -0.3 18,413 + -0.4 18,424 - -0.2 18,431 - +0.0 18,482 - +0.3 18,487 + +3.7 18,700 + +0.3 18,711 + H281DRAFT_05440 0.11 +0.9 18,780 - H281DRAFT_05440 0.19 -0.3 18,790 - H281DRAFT_05440 0.21 -0.8 18,861 + H281DRAFT_05440 0.29 +0.2 18,862 - H281DRAFT_05440 0.29 +0.4 19,071 + H281DRAFT_05440 0.54 -1.0 19,081 - H281DRAFT_05440 0.55 -0.1 19,146 + H281DRAFT_05440 0.62 -1.2 19,146 + +0.3 19,465 - +0.0 19,465 - -0.2 19,465 - +0.5
Or see this region's nucleotide sequence