Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05393 and H281DRAFT_05394 are separated by 119 nucleotides H281DRAFT_05394 and H281DRAFT_05395 are separated by 300 nucleotides H281DRAFT_05395 and H281DRAFT_05396 are separated by 454 nucleotides
H281DRAFT_05393: H281DRAFT_05393 - Outer membrane protein (porin), at 156,174 to 157,334
_05393
H281DRAFT_05394: H281DRAFT_05394 - hypothetical protein, at 157,454 to 157,753
_05394
H281DRAFT_05395: H281DRAFT_05395 - Protein of unknown function (DUF3465), at 158,054 to 158,470
_05395
H281DRAFT_05396: H281DRAFT_05396 - lipoprotein NlpD, at 158,925 to 159,857
_05396
Position (kb) 158
159 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.086 kb on + strand, within H281DRAFT_05393 at 157.086 kb on + strand, within H281DRAFT_05393 at 157.087 kb on - strand, within H281DRAFT_05393 at 157.087 kb on - strand, within H281DRAFT_05393 at 157.087 kb on - strand, within H281DRAFT_05393 at 157.094 kb on + strand, within H281DRAFT_05393 at 157.095 kb on - strand, within H281DRAFT_05393 at 157.095 kb on - strand, within H281DRAFT_05393 at 157.095 kb on - strand, within H281DRAFT_05393 at 157.107 kb on + strand, within H281DRAFT_05393 at 157.168 kb on - strand, within H281DRAFT_05393 at 157.168 kb on - strand, within H281DRAFT_05393 at 157.194 kb on + strand, within H281DRAFT_05393 at 157.194 kb on + strand, within H281DRAFT_05393 at 157.195 kb on - strand, within H281DRAFT_05393 at 157.195 kb on - strand, within H281DRAFT_05393 at 157.259 kb on + strand at 157.260 kb on - strand at 157.287 kb on - strand at 157.332 kb on + strand at 157.370 kb on - strand at 157.590 kb on + strand, within H281DRAFT_05394 at 157.591 kb on - strand, within H281DRAFT_05394 at 157.771 kb on + strand at 157.771 kb on + strand at 157.771 kb on + strand at 157.772 kb on - strand at 157.772 kb on - strand at 157.772 kb on - strand at 157.848 kb on + strand at 157.908 kb on + strand at 157.909 kb on - strand at 157.909 kb on - strand at 157.909 kb on - strand at 157.923 kb on + strand at 157.938 kb on - strand at 157.974 kb on - strand at 158.093 kb on + strand at 158.094 kb on - strand at 158.148 kb on + strand, within H281DRAFT_05395 at 158.148 kb on + strand, within H281DRAFT_05395 at 158.148 kb on + strand, within H281DRAFT_05395 at 158.191 kb on + strand, within H281DRAFT_05395 at 158.191 kb on + strand, within H281DRAFT_05395 at 158.192 kb on - strand, within H281DRAFT_05395 at 158.192 kb on - strand, within H281DRAFT_05395 at 158.351 kb on + strand, within H281DRAFT_05395 at 158.352 kb on - strand, within H281DRAFT_05395 at 158.352 kb on - strand, within H281DRAFT_05395 at 158.373 kb on - strand, within H281DRAFT_05395 at 158.439 kb on - strand at 158.448 kb on - strand at 158.549 kb on + strand at 158.616 kb on - strand at 158.668 kb on - strand at 158.686 kb on + strand at 158.687 kb on - strand at 158.908 kb on + strand at 158.908 kb on + strand at 158.908 kb on + strand at 158.908 kb on + strand at 158.909 kb on - strand at 159.157 kb on - strand, within H281DRAFT_05396 at 159.348 kb on - strand, within H281DRAFT_05396
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 157,086 + H281DRAFT_05393 0.79 +0.3 157,086 + H281DRAFT_05393 0.79 -0.4 157,087 - H281DRAFT_05393 0.79 +1.1 157,087 - H281DRAFT_05393 0.79 -0.2 157,087 - H281DRAFT_05393 0.79 -0.8 157,094 + H281DRAFT_05393 0.79 +0.3 157,095 - H281DRAFT_05393 0.79 -0.1 157,095 - H281DRAFT_05393 0.79 +0.9 157,095 - H281DRAFT_05393 0.79 -0.7 157,107 + H281DRAFT_05393 0.80 +0.4 157,168 - H281DRAFT_05393 0.86 -2.7 157,168 - H281DRAFT_05393 0.86 +1.0 157,194 + H281DRAFT_05393 0.88 +0.0 157,194 + H281DRAFT_05393 0.88 -0.5 157,195 - H281DRAFT_05393 0.88 +0.1 157,195 - H281DRAFT_05393 0.88 -0.1 157,259 + -0.2 157,260 - -0.1 157,287 - -0.3 157,332 + +1.9 157,370 - +0.8 157,590 + H281DRAFT_05394 0.45 -0.3 157,591 - H281DRAFT_05394 0.46 +0.2 157,771 + -0.5 157,771 + -0.4 157,771 + +0.5 157,772 - -0.6 157,772 - -1.2 157,772 - -0.1 157,848 + +0.9 157,908 + -0.6 157,909 - -0.3 157,909 - -0.4 157,909 - -0.3 157,923 + -0.1 157,938 - -0.6 157,974 - +0.4 158,093 + -0.6 158,094 - +0.3 158,148 + H281DRAFT_05395 0.23 -0.3 158,148 + H281DRAFT_05395 0.23 +0.1 158,148 + H281DRAFT_05395 0.23 -0.5 158,191 + H281DRAFT_05395 0.33 -0.9 158,191 + H281DRAFT_05395 0.33 +0.1 158,192 - H281DRAFT_05395 0.33 -0.9 158,192 - H281DRAFT_05395 0.33 -1.1 158,351 + H281DRAFT_05395 0.71 +0.2 158,352 - H281DRAFT_05395 0.71 -1.0 158,352 - H281DRAFT_05395 0.71 -0.4 158,373 - H281DRAFT_05395 0.76 +0.2 158,439 - +1.2 158,448 - +0.2 158,549 + -0.9 158,616 - +1.1 158,668 - +0.7 158,686 + -0.3 158,687 - +0.2 158,908 + +0.3 158,908 + -0.4 158,908 + +0.3 158,908 + -0.7 158,909 - +0.1 159,157 - H281DRAFT_05396 0.25 -0.0 159,348 - H281DRAFT_05396 0.45 +1.5
Or see this region's nucleotide sequence