Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05279 and H281DRAFT_05280 overlap by 4 nucleotides H281DRAFT_05280 and H281DRAFT_05281 are separated by 5 nucleotides H281DRAFT_05281 and H281DRAFT_05282 overlap by 1 nucleotides
H281DRAFT_05279: H281DRAFT_05279 - malonate decarboxylase beta subunit, at 21,442 to 22,329
_05279
H281DRAFT_05280: H281DRAFT_05280 - malonate decarboxylase delta subunit, at 22,326 to 22,640
_05280
H281DRAFT_05281: H281DRAFT_05281 - triphosphoribosyl-dephospho-CoA synthase, at 22,646 to 23,608
_05281
H281DRAFT_05282: H281DRAFT_05282 - malonate decarboxylase alpha subunit, at 23,608 to 25,269
_05282
Position (kb) 22
23
24 Strain fitness (log2 ratio) -1
0
1 at 21.771 kb on + strand, within H281DRAFT_05279 at 23.029 kb on - strand, within H281DRAFT_05281 at 23.639 kb on + strand at 23.639 kb on + strand at 23.640 kb on - strand at 23.909 kb on + strand, within H281DRAFT_05282 at 23.909 kb on + strand, within H281DRAFT_05282 at 23.909 kb on + strand, within H281DRAFT_05282 at 23.910 kb on - strand, within H281DRAFT_05282 at 24.002 kb on + strand, within H281DRAFT_05282 at 24.002 kb on + strand, within H281DRAFT_05282 at 24.002 kb on + strand, within H281DRAFT_05282 at 24.003 kb on - strand, within H281DRAFT_05282 at 24.287 kb on - strand, within H281DRAFT_05282 at 24.308 kb on + strand, within H281DRAFT_05282 at 24.308 kb on + strand, within H281DRAFT_05282 at 24.524 kb on + strand, within H281DRAFT_05282
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 21,771 + H281DRAFT_05279 0.37 +0.4 23,029 - H281DRAFT_05281 0.40 -1.6 23,639 + +0.6 23,639 + -0.4 23,640 - -0.6 23,909 + H281DRAFT_05282 0.18 -0.2 23,909 + H281DRAFT_05282 0.18 -1.7 23,909 + H281DRAFT_05282 0.18 -1.6 23,910 - H281DRAFT_05282 0.18 -0.5 24,002 + H281DRAFT_05282 0.24 +0.2 24,002 + H281DRAFT_05282 0.24 +0.2 24,002 + H281DRAFT_05282 0.24 +0.2 24,003 - H281DRAFT_05282 0.24 -0.4 24,287 - H281DRAFT_05282 0.41 -1.6 24,308 + H281DRAFT_05282 0.42 -0.3 24,308 + H281DRAFT_05282 0.42 +0.8 24,524 + H281DRAFT_05282 0.55 -0.7
Or see this region's nucleotide sequence