Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04935 and H281DRAFT_04936 are separated by 310 nucleotides H281DRAFT_04936 and H281DRAFT_04937 are separated by 16 nucleotides
H281DRAFT_04935: H281DRAFT_04935 - D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4), at 116,847 to 118,499
_04935
H281DRAFT_04936: H281DRAFT_04936 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 118,810 to 120,285
_04936
H281DRAFT_04937: H281DRAFT_04937 - MFS transporter, DHA2 family, multidrug resistance protein, at 120,302 to 121,930
_04937
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -1
0
1
2 at 118.241 kb on + strand, within H281DRAFT_04935 at 118.289 kb on + strand, within H281DRAFT_04935 at 118.290 kb on - strand, within H281DRAFT_04935 at 118.611 kb on + strand at 118.612 kb on - strand at 119.146 kb on + strand, within H281DRAFT_04936 at 119.146 kb on + strand, within H281DRAFT_04936 at 119.147 kb on - strand, within H281DRAFT_04936 at 119.155 kb on + strand, within H281DRAFT_04936 at 119.192 kb on + strand, within H281DRAFT_04936 at 119.192 kb on + strand, within H281DRAFT_04936 at 119.837 kb on + strand, within H281DRAFT_04936 at 119.837 kb on + strand, within H281DRAFT_04936 at 120.021 kb on + strand, within H281DRAFT_04936 at 120.399 kb on + strand at 120.415 kb on - strand at 120.663 kb on + strand, within H281DRAFT_04937
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 118,241 + H281DRAFT_04935 0.84 -0.2 118,289 + H281DRAFT_04935 0.87 +0.2 118,290 - H281DRAFT_04935 0.87 -1.0 118,611 + +2.0 118,612 - -0.1 119,146 + H281DRAFT_04936 0.23 -0.6 119,146 + H281DRAFT_04936 0.23 +0.5 119,147 - H281DRAFT_04936 0.23 +1.2 119,155 + H281DRAFT_04936 0.23 +0.9 119,192 + H281DRAFT_04936 0.26 -0.3 119,192 + H281DRAFT_04936 0.26 +0.1 119,837 + H281DRAFT_04936 0.70 -0.6 119,837 + H281DRAFT_04936 0.70 -0.4 120,021 + H281DRAFT_04936 0.82 +1.1 120,399 + -0.4 120,415 - -0.9 120,663 + H281DRAFT_04937 0.22 -0.0
Or see this region's nucleotide sequence