Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04797 and H281DRAFT_04798 are separated by 602 nucleotides H281DRAFT_04798 and H281DRAFT_04799 are separated by 102 nucleotides
H281DRAFT_04797: H281DRAFT_04797 - tyrosine-protein kinase Etk/Wzc, at 225,575 to 227,827
_04797
H281DRAFT_04798: H281DRAFT_04798 - Predicted xylanase/chitin deacetylase, at 228,430 to 229,359
_04798
H281DRAFT_04799: H281DRAFT_04799 - parallel beta-helix repeat (two copies), at 229,462 to 231,264
_04799
Position (kb) 228
229
230 Strain fitness (log2 ratio) -1
0
1 at 227.489 kb on + strand, within H281DRAFT_04797 at 227.493 kb on + strand, within H281DRAFT_04797 at 227.530 kb on + strand, within H281DRAFT_04797 at 227.637 kb on - strand at 227.917 kb on + strand at 228.196 kb on + strand at 228.261 kb on + strand at 228.262 kb on - strand at 228.267 kb on - strand at 228.738 kb on + strand, within H281DRAFT_04798 at 228.943 kb on + strand, within H281DRAFT_04798 at 229.085 kb on - strand, within H281DRAFT_04798 at 229.440 kb on - strand at 229.569 kb on + strand at 229.673 kb on + strand, within H281DRAFT_04799 at 230.038 kb on - strand, within H281DRAFT_04799 at 230.084 kb on - strand, within H281DRAFT_04799
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 227,489 + H281DRAFT_04797 0.85 -0.6 227,493 + H281DRAFT_04797 0.85 -1.2 227,530 + H281DRAFT_04797 0.87 +1.0 227,637 - +1.1 227,917 + +0.8 228,196 + -0.5 228,261 + -0.1 228,262 - +0.9 228,267 - +0.2 228,738 + H281DRAFT_04798 0.33 +0.4 228,943 + H281DRAFT_04798 0.55 +0.3 229,085 - H281DRAFT_04798 0.70 +0.5 229,440 - +1.2 229,569 + -0.0 229,673 + H281DRAFT_04799 0.12 +0.2 230,038 - H281DRAFT_04799 0.32 -0.6 230,084 - H281DRAFT_04799 0.34 +1.4
Or see this region's nucleotide sequence