Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04229 and H281DRAFT_04230 are separated by 224 nucleotides H281DRAFT_04230 and H281DRAFT_04231 are separated by 185 nucleotides
H281DRAFT_04229: H281DRAFT_04229 - glycerol kinase, at 348,801 to 350,300
_04229
H281DRAFT_04230: H281DRAFT_04230 - glycerol uptake facilitator protein, at 350,525 to 351,238
_04230
H281DRAFT_04231: H281DRAFT_04231 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 351,424 to 352,110
_04231
Position (kb) 350
351
352 Strain fitness (log2 ratio) -1
0
1
2 at 349.590 kb on + strand, within H281DRAFT_04229 at 349.590 kb on + strand, within H281DRAFT_04229 at 349.695 kb on + strand, within H281DRAFT_04229 at 349.695 kb on + strand, within H281DRAFT_04229 at 349.695 kb on + strand, within H281DRAFT_04229 at 349.696 kb on - strand, within H281DRAFT_04229 at 349.922 kb on + strand, within H281DRAFT_04229 at 350.348 kb on + strand at 350.348 kb on + strand at 350.498 kb on + strand at 350.534 kb on + strand at 350.681 kb on + strand, within H281DRAFT_04230 at 350.682 kb on - strand, within H281DRAFT_04230 at 350.682 kb on - strand, within H281DRAFT_04230 at 350.682 kb on - strand, within H281DRAFT_04230 at 350.696 kb on + strand, within H281DRAFT_04230 at 350.778 kb on - strand, within H281DRAFT_04230 at 350.834 kb on + strand, within H281DRAFT_04230 at 350.972 kb on + strand, within H281DRAFT_04230 at 350.973 kb on - strand, within H281DRAFT_04230 at 351.215 kb on + strand at 351.216 kb on - strand at 351.216 kb on - strand at 351.221 kb on + strand at 351.221 kb on + strand at 351.222 kb on - strand at 351.346 kb on + strand at 351.347 kb on - strand at 351.347 kb on - strand at 351.458 kb on + strand at 351.459 kb on - strand at 351.459 kb on - strand at 351.856 kb on + strand, within H281DRAFT_04231 at 351.984 kb on + strand, within H281DRAFT_04231 at 352.108 kb on + strand at 352.131 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 349,590 + H281DRAFT_04229 0.53 +1.0 349,590 + H281DRAFT_04229 0.53 -0.2 349,695 + H281DRAFT_04229 0.60 -0.4 349,695 + H281DRAFT_04229 0.60 +1.0 349,695 + H281DRAFT_04229 0.60 +0.3 349,696 - H281DRAFT_04229 0.60 +0.7 349,922 + H281DRAFT_04229 0.75 +1.0 350,348 + -0.3 350,348 + +0.1 350,498 + -0.3 350,534 + -0.2 350,681 + H281DRAFT_04230 0.22 +0.9 350,682 - H281DRAFT_04230 0.22 +0.0 350,682 - H281DRAFT_04230 0.22 +0.8 350,682 - H281DRAFT_04230 0.22 +0.9 350,696 + H281DRAFT_04230 0.24 -0.4 350,778 - H281DRAFT_04230 0.35 +0.6 350,834 + H281DRAFT_04230 0.43 +1.3 350,972 + H281DRAFT_04230 0.63 +0.2 350,973 - H281DRAFT_04230 0.63 -0.2 351,215 + -0.1 351,216 - +0.0 351,216 - -0.4 351,221 + +2.4 351,221 + -0.1 351,222 - +1.0 351,346 + -0.1 351,347 - -0.8 351,347 - +0.0 351,458 + +1.7 351,459 - +0.6 351,459 - -0.9 351,856 + H281DRAFT_04231 0.63 -0.7 351,984 + H281DRAFT_04231 0.82 -0.9 352,108 + -0.2 352,131 - -0.1
Or see this region's nucleotide sequence