Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03786 and H281DRAFT_03787 are separated by 59 nucleotides H281DRAFT_03787 and H281DRAFT_03788 overlap by 4 nucleotides H281DRAFT_03788 and H281DRAFT_03789 are separated by 99 nucleotides
H281DRAFT_03786: H281DRAFT_03786 - Lecithin retinol acyltransferase, at 308,231 to 308,722
_03786
H281DRAFT_03787: H281DRAFT_03787 - hypothetical protein, at 308,782 to 309,033
_03787
H281DRAFT_03788: H281DRAFT_03788 - transcriptional regulator, LysR family, at 309,030 to 309,908
_03788
H281DRAFT_03789: H281DRAFT_03789 - beta-lactamase class A, at 310,008 to 310,973
_03789
Position (kb) 308
309
310 Strain fitness (log2 ratio) -1
0
1
2 at 307.841 kb on + strand at 308.088 kb on + strand at 308.089 kb on - strand at 308.154 kb on - strand at 308.248 kb on + strand at 308.348 kb on + strand, within H281DRAFT_03786 at 308.349 kb on - strand, within H281DRAFT_03786 at 308.483 kb on + strand, within H281DRAFT_03786 at 308.735 kb on - strand at 309.031 kb on + strand at 309.297 kb on - strand, within H281DRAFT_03788 at 309.408 kb on + strand, within H281DRAFT_03788 at 309.409 kb on - strand, within H281DRAFT_03788 at 309.409 kb on - strand, within H281DRAFT_03788 at 309.522 kb on - strand, within H281DRAFT_03788 at 309.898 kb on + strand at 309.899 kb on - strand at 309.946 kb on + strand at 309.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 307,841 + +0.7 308,088 + +0.5 308,089 - +1.8 308,154 - +0.7 308,248 + -0.6 308,348 + H281DRAFT_03786 0.24 -0.5 308,349 - H281DRAFT_03786 0.24 -0.0 308,483 + H281DRAFT_03786 0.51 +0.6 308,735 - -0.0 309,031 + +1.3 309,297 - H281DRAFT_03788 0.30 +0.2 309,408 + H281DRAFT_03788 0.43 +0.4 309,409 - H281DRAFT_03788 0.43 +0.6 309,409 - H281DRAFT_03788 0.43 -1.5 309,522 - H281DRAFT_03788 0.56 +0.3 309,898 + +0.8 309,899 - -0.2 309,946 + +0.7 309,947 - -0.2
Or see this region's nucleotide sequence