Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03359 and H281DRAFT_03360 are separated by 241 nucleotides H281DRAFT_03360 and H281DRAFT_03361 are separated by 12 nucleotides H281DRAFT_03361 and H281DRAFT_03362 are separated by 20 nucleotides
H281DRAFT_03359: H281DRAFT_03359 - tripartite ATP-independent transporter solute receptor, DctP family, at 418,023 to 419,051
_03359
H281DRAFT_03360: H281DRAFT_03360 - succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 419,293 to 420,774
_03360
H281DRAFT_03361: H281DRAFT_03361 - 2-keto-3-deoxy-L-rhamnonate aldolase RhmA, at 420,787 to 421,611
_03361
H281DRAFT_03362: H281DRAFT_03362 - Acyl-CoA dehydrogenase, at 421,632 to 422,813
_03362
Position (kb) 419
420
421 Strain fitness (log2 ratio) -1
0
1
2
3 at 418.342 kb on + strand, within H281DRAFT_03359 at 418.357 kb on + strand, within H281DRAFT_03359 at 418.358 kb on - strand, within H281DRAFT_03359 at 418.430 kb on - strand, within H281DRAFT_03359 at 418.446 kb on - strand, within H281DRAFT_03359 at 418.543 kb on - strand, within H281DRAFT_03359 at 418.639 kb on + strand, within H281DRAFT_03359 at 418.640 kb on - strand, within H281DRAFT_03359 at 418.797 kb on - strand, within H281DRAFT_03359 at 418.797 kb on - strand, within H281DRAFT_03359 at 418.931 kb on - strand, within H281DRAFT_03359 at 419.066 kb on + strand at 419.118 kb on - strand at 419.278 kb on + strand at 419.279 kb on - strand at 419.279 kb on - strand at 419.300 kb on + strand at 419.301 kb on - strand at 419.410 kb on + strand at 419.413 kb on - strand at 419.680 kb on + strand, within H281DRAFT_03360 at 419.937 kb on + strand, within H281DRAFT_03360 at 420.176 kb on - strand, within H281DRAFT_03360 at 420.176 kb on - strand, within H281DRAFT_03360 at 420.353 kb on + strand, within H281DRAFT_03360 at 420.417 kb on + strand, within H281DRAFT_03360 at 420.418 kb on - strand, within H281DRAFT_03360 at 420.618 kb on + strand, within H281DRAFT_03360 at 420.619 kb on - strand, within H281DRAFT_03360 at 420.709 kb on + strand at 421.087 kb on - strand, within H281DRAFT_03361 at 421.116 kb on + strand, within H281DRAFT_03361 at 421.116 kb on + strand, within H281DRAFT_03361 at 421.117 kb on - strand, within H281DRAFT_03361 at 421.365 kb on + strand, within H281DRAFT_03361 at 421.365 kb on + strand, within H281DRAFT_03361 at 421.444 kb on + strand, within H281DRAFT_03361 at 421.468 kb on + strand, within H281DRAFT_03361 at 421.676 kb on + strand at 421.684 kb on - strand at 421.755 kb on + strand, within H281DRAFT_03362 at 421.755 kb on + strand, within H281DRAFT_03362 at 421.756 kb on - strand, within H281DRAFT_03362
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 418,342 + H281DRAFT_03359 0.31 -0.2 418,357 + H281DRAFT_03359 0.32 +0.1 418,358 - H281DRAFT_03359 0.33 +0.6 418,430 - H281DRAFT_03359 0.40 +0.3 418,446 - H281DRAFT_03359 0.41 -0.3 418,543 - H281DRAFT_03359 0.51 -0.6 418,639 + H281DRAFT_03359 0.60 -1.1 418,640 - H281DRAFT_03359 0.60 -0.2 418,797 - H281DRAFT_03359 0.75 +0.2 418,797 - H281DRAFT_03359 0.75 +0.5 418,931 - H281DRAFT_03359 0.88 -0.4 419,066 + +0.7 419,118 - -0.3 419,278 + -0.6 419,279 - -0.3 419,279 - -0.6 419,300 + +0.8 419,301 - -1.3 419,410 + -1.3 419,413 - -0.0 419,680 + H281DRAFT_03360 0.26 +3.0 419,937 + H281DRAFT_03360 0.43 -0.4 420,176 - H281DRAFT_03360 0.60 +1.2 420,176 - H281DRAFT_03360 0.60 -0.3 420,353 + H281DRAFT_03360 0.72 +0.7 420,417 + H281DRAFT_03360 0.76 +0.3 420,418 - H281DRAFT_03360 0.76 +0.7 420,618 + H281DRAFT_03360 0.89 +1.1 420,619 - H281DRAFT_03360 0.89 +0.6 420,709 + -0.4 421,087 - H281DRAFT_03361 0.36 +0.9 421,116 + H281DRAFT_03361 0.40 +0.7 421,116 + H281DRAFT_03361 0.40 +0.1 421,117 - H281DRAFT_03361 0.40 +0.1 421,365 + H281DRAFT_03361 0.70 -0.2 421,365 + H281DRAFT_03361 0.70 -0.3 421,444 + H281DRAFT_03361 0.80 +0.8 421,468 + H281DRAFT_03361 0.83 +1.1 421,676 + -0.1 421,684 - +0.6 421,755 + H281DRAFT_03362 0.10 -0.2 421,755 + H281DRAFT_03362 0.10 -0.0 421,756 - H281DRAFT_03362 0.10 +1.6
Or see this region's nucleotide sequence