Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03232 and H281DRAFT_03233 are separated by 181 nucleotides H281DRAFT_03233 and H281DRAFT_03234 are separated by 89 nucleotides H281DRAFT_03234 and H281DRAFT_03235 are separated by 45 nucleotides
H281DRAFT_03232: H281DRAFT_03232 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 285,123 to 285,974
_03232
H281DRAFT_03233: H281DRAFT_03233 - cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases, at 286,156 to 287,442
_03233
H281DRAFT_03234: H281DRAFT_03234 - chemotaxis protein MotA, at 287,532 to 288,296
_03234
H281DRAFT_03235: H281DRAFT_03235 - chemotaxis protein MotB, at 288,342 to 289,034
_03235
Position (kb) 286
287
288 Strain fitness (log2 ratio) -1
0
1
2 at 285.241 kb on + strand, within H281DRAFT_03232 at 285.242 kb on - strand, within H281DRAFT_03232 at 285.269 kb on + strand, within H281DRAFT_03232 at 285.273 kb on + strand, within H281DRAFT_03232 at 285.312 kb on + strand, within H281DRAFT_03232 at 285.313 kb on - strand, within H281DRAFT_03232 at 285.349 kb on - strand, within H281DRAFT_03232 at 285.503 kb on - strand, within H281DRAFT_03232 at 285.503 kb on - strand, within H281DRAFT_03232 at 285.503 kb on - strand, within H281DRAFT_03232 at 285.771 kb on + strand, within H281DRAFT_03232 at 286.015 kb on + strand at 286.132 kb on + strand at 286.261 kb on + strand at 286.262 kb on - strand at 286.295 kb on - strand, within H281DRAFT_03233 at 286.569 kb on + strand, within H281DRAFT_03233 at 286.569 kb on + strand, within H281DRAFT_03233 at 287.092 kb on + strand, within H281DRAFT_03233 at 287.224 kb on + strand, within H281DRAFT_03233 at 287.549 kb on - strand at 287.701 kb on - strand, within H281DRAFT_03234 at 288.045 kb on - strand, within H281DRAFT_03234 at 288.102 kb on + strand, within H281DRAFT_03234 at 288.192 kb on + strand, within H281DRAFT_03234
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 285,241 + H281DRAFT_03232 0.14 +1.8 285,242 - H281DRAFT_03232 0.14 +0.1 285,269 + H281DRAFT_03232 0.17 +0.5 285,273 + H281DRAFT_03232 0.18 +0.2 285,312 + H281DRAFT_03232 0.22 +0.3 285,313 - H281DRAFT_03232 0.22 +0.9 285,349 - H281DRAFT_03232 0.27 -0.5 285,503 - H281DRAFT_03232 0.45 +0.7 285,503 - H281DRAFT_03232 0.45 +2.6 285,503 - H281DRAFT_03232 0.45 -0.1 285,771 + H281DRAFT_03232 0.76 -0.4 286,015 + -0.5 286,132 + +0.2 286,261 + -0.7 286,262 - +0.1 286,295 - H281DRAFT_03233 0.11 -0.1 286,569 + H281DRAFT_03233 0.32 -1.1 286,569 + H281DRAFT_03233 0.32 -0.1 287,092 + H281DRAFT_03233 0.73 +1.0 287,224 + H281DRAFT_03233 0.83 +0.4 287,549 - -0.1 287,701 - H281DRAFT_03234 0.22 +1.4 288,045 - H281DRAFT_03234 0.67 +0.1 288,102 + H281DRAFT_03234 0.75 +0.5 288,192 + H281DRAFT_03234 0.86 +1.2
Or see this region's nucleotide sequence