Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03012

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03011 and H281DRAFT_03012 are separated by 104 nucleotidesH281DRAFT_03012 and H281DRAFT_03013 are separated by 96 nucleotides H281DRAFT_03011: H281DRAFT_03011 - NAD(P) transhydrogenase subunit beta, at 38,545 to 39,579 _03011 H281DRAFT_03012: H281DRAFT_03012 - hypothetical protein, at 39,684 to 39,989 _03012 H281DRAFT_03013: H281DRAFT_03013 - transcriptional regulator, LysR family, at 40,086 to 41,033 _03013 Position (kb) 39 40Strain fitness (log2 ratio) -1 0 1at 39.170 kb on + strand, within H281DRAFT_03011at 39.171 kb on - strand, within H281DRAFT_03011at 39.264 kb on - strand, within H281DRAFT_03011at 39.292 kb on + strand, within H281DRAFT_03011at 39.472 kb on + strand, within H281DRAFT_03011at 39.473 kb on - strand, within H281DRAFT_03011at 39.615 kb on + strandat 39.616 kb on - strandat 39.716 kb on - strandat 39.764 kb on - strand, within H281DRAFT_03012at 39.764 kb on - strand, within H281DRAFT_03012at 39.797 kb on + strand, within H281DRAFT_03012at 39.902 kb on - strand, within H281DRAFT_03012at 39.902 kb on - strand, within H281DRAFT_03012at 40.034 kb on + strandat 40.035 kb on - strandat 40.035 kb on - strandat 40.217 kb on - strand, within H281DRAFT_03013at 40.217 kb on - strand, within H281DRAFT_03013at 40.292 kb on + strand, within H281DRAFT_03013at 40.443 kb on + strand, within H281DRAFT_03013at 40.444 kb on - strand, within H281DRAFT_03013at 40.509 kb on - strand, within H281DRAFT_03013at 40.528 kb on + strand, within H281DRAFT_03013at 40.711 kb on + strand, within H281DRAFT_03013at 40.712 kb on - strand, within H281DRAFT_03013at 40.820 kb on - strand, within H281DRAFT_03013at 40.852 kb on + strand, within H281DRAFT_03013at 40.853 kb on - strand, within H281DRAFT_03013

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
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39,170 + H281DRAFT_03011 0.60 +0.0
39,171 - H281DRAFT_03011 0.60 -0.3
39,264 - H281DRAFT_03011 0.69 -0.1
39,292 + H281DRAFT_03011 0.72 -0.4
39,472 + H281DRAFT_03011 0.90 -1.6
39,473 - H281DRAFT_03011 0.90 -0.3
39,615 + +0.1
39,616 - +0.3
39,716 - +0.8
39,764 - H281DRAFT_03012 0.26 +0.5
39,764 - H281DRAFT_03012 0.26 -0.6
39,797 + H281DRAFT_03012 0.37 -0.8
39,902 - H281DRAFT_03012 0.71 -0.5
39,902 - H281DRAFT_03012 0.71 +0.4
40,034 + +0.4
40,035 - -0.0
40,035 - -0.2
40,217 - H281DRAFT_03013 0.14 +1.2
40,217 - H281DRAFT_03013 0.14 -0.6
40,292 + H281DRAFT_03013 0.22 -0.5
40,443 + H281DRAFT_03013 0.38 -0.5
40,444 - H281DRAFT_03013 0.38 +0.4
40,509 - H281DRAFT_03013 0.45 +0.8
40,528 + H281DRAFT_03013 0.47 -0.1
40,711 + H281DRAFT_03013 0.66 -1.5
40,712 - H281DRAFT_03013 0.66 -0.2
40,820 - H281DRAFT_03013 0.77 -0.1
40,852 + H281DRAFT_03013 0.81 +0.1
40,853 - H281DRAFT_03013 0.81 +1.1

Or see this region's nucleotide sequence