Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02469 and H281DRAFT_02470 are separated by 54 nucleotides H281DRAFT_02470 and H281DRAFT_02471 are separated by 33 nucleotides
H281DRAFT_02469: H281DRAFT_02469 - membrane dipeptidase, at 38,642 to 39,613
_02469
H281DRAFT_02470: H281DRAFT_02470 - Predicted hydrocarbon binding protein, contains 4VR domain, at 39,668 to 40,204
_02470
H281DRAFT_02471: H281DRAFT_02471 - 2,4-dienoyl-CoA reductase, at 40,238 to 42,301
_02471
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1 at 38.719 kb on + strand at 38.826 kb on - strand, within H281DRAFT_02469 at 38.945 kb on + strand, within H281DRAFT_02469 at 38.993 kb on + strand, within H281DRAFT_02469 at 38.994 kb on - strand, within H281DRAFT_02469 at 39.026 kb on + strand, within H281DRAFT_02469 at 39.026 kb on + strand, within H281DRAFT_02469 at 39.628 kb on + strand at 39.629 kb on - strand at 39.686 kb on - strand at 39.773 kb on - strand, within H281DRAFT_02470 at 39.807 kb on - strand, within H281DRAFT_02470 at 39.833 kb on + strand, within H281DRAFT_02470 at 39.835 kb on + strand, within H281DRAFT_02470 at 39.836 kb on - strand, within H281DRAFT_02470 at 40.047 kb on - strand, within H281DRAFT_02470 at 40.047 kb on - strand, within H281DRAFT_02470 at 40.203 kb on - strand at 40.267 kb on + strand at 40.268 kb on - strand at 40.358 kb on + strand at 40.360 kb on + strand at 40.474 kb on + strand, within H281DRAFT_02471
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 38,719 + -0.8 38,826 - H281DRAFT_02469 0.19 +0.0 38,945 + H281DRAFT_02469 0.31 +0.3 38,993 + H281DRAFT_02469 0.36 +0.4 38,994 - H281DRAFT_02469 0.36 -0.6 39,026 + H281DRAFT_02469 0.40 +0.0 39,026 + H281DRAFT_02469 0.40 +1.4 39,628 + -0.3 39,629 - -0.3 39,686 - +0.3 39,773 - H281DRAFT_02470 0.20 -0.2 39,807 - H281DRAFT_02470 0.26 -0.2 39,833 + H281DRAFT_02470 0.31 +0.2 39,835 + H281DRAFT_02470 0.31 -0.2 39,836 - H281DRAFT_02470 0.31 +0.6 40,047 - H281DRAFT_02470 0.71 +0.5 40,047 - H281DRAFT_02470 0.71 -0.2 40,203 - +0.5 40,267 + -1.2 40,268 - -0.1 40,358 + -0.2 40,360 + +1.1 40,474 + H281DRAFT_02471 0.11 +1.4
Or see this region's nucleotide sequence