Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02274 and H281DRAFT_02275 overlap by 23 nucleotides H281DRAFT_02275 and H281DRAFT_02276 overlap by 4 nucleotides H281DRAFT_02276 and H281DRAFT_02277 are separated by 114 nucleotides H281DRAFT_02277 and H281DRAFT_02278 are separated by 236 nucleotides
H281DRAFT_02274: H281DRAFT_02274 - Site-specific DNA recombinase, at 419,368 to 420,882
_02274
H281DRAFT_02275: H281DRAFT_02275 - chromosome partitioning protein, ParB family, at 420,860 to 421,774
_02275
H281DRAFT_02276: H281DRAFT_02276 - ParB-like nuclease domain-containing protein, at 421,771 to 422,670
_02276
H281DRAFT_02277: H281DRAFT_02277 - hypothetical protein, at 422,785 to 423,126
_02277
H281DRAFT_02278: H281DRAFT_02278 - Protein of unknown function (DUF3296), at 423,363 to 424,607
_02278
Position (kb) 421
422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 420.877 kb on - strand at 421.132 kb on + strand, within H281DRAFT_02275 at 421.133 kb on - strand, within H281DRAFT_02275 at 421.201 kb on + strand, within H281DRAFT_02275 at 421.250 kb on + strand, within H281DRAFT_02275 at 421.252 kb on + strand, within H281DRAFT_02275 at 421.253 kb on - strand, within H281DRAFT_02275 at 421.253 kb on - strand, within H281DRAFT_02275 at 421.253 kb on - strand, within H281DRAFT_02275 at 421.295 kb on + strand, within H281DRAFT_02275 at 421.296 kb on - strand, within H281DRAFT_02275 at 421.296 kb on - strand, within H281DRAFT_02275 at 421.296 kb on - strand, within H281DRAFT_02275 at 421.297 kb on + strand, within H281DRAFT_02275 at 421.364 kb on - strand, within H281DRAFT_02275 at 421.368 kb on + strand, within H281DRAFT_02275 at 421.440 kb on - strand, within H281DRAFT_02275 at 421.496 kb on - strand, within H281DRAFT_02275 at 421.520 kb on + strand, within H281DRAFT_02275 at 421.521 kb on - strand, within H281DRAFT_02275 at 421.521 kb on - strand, within H281DRAFT_02275 at 421.740 kb on + strand at 421.750 kb on + strand at 421.751 kb on - strand at 421.914 kb on - strand, within H281DRAFT_02276 at 422.271 kb on - strand, within H281DRAFT_02276 at 422.347 kb on + strand, within H281DRAFT_02276 at 422.347 kb on + strand, within H281DRAFT_02276 at 422.348 kb on - strand at 422.348 kb on - strand, within H281DRAFT_02276 at 422.500 kb on - strand, within H281DRAFT_02276 at 422.647 kb on - strand at 422.668 kb on + strand at 422.712 kb on + strand at 422.713 kb on - strand at 422.713 kb on - strand at 422.770 kb on + strand at 423.120 kb on + strand at 423.120 kb on + strand at 423.164 kb on + strand at 423.164 kb on + strand at 423.164 kb on + strand at 423.324 kb on + strand at 423.324 kb on + strand at 423.325 kb on - strand at 423.478 kb on + strand at 423.520 kb on + strand, within H281DRAFT_02278 at 423.521 kb on - strand, within H281DRAFT_02278 at 423.544 kb on + strand, within H281DRAFT_02278 at 423.561 kb on - strand, within H281DRAFT_02278 at 423.573 kb on - strand, within H281DRAFT_02278 at 423.601 kb on - strand, within H281DRAFT_02278
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 420,877 - +0.7 421,132 + H281DRAFT_02275 0.30 +0.1 421,133 - H281DRAFT_02275 0.30 +0.4 421,201 + H281DRAFT_02275 0.37 -0.6 421,250 + H281DRAFT_02275 0.43 +0.8 421,252 + H281DRAFT_02275 0.43 +0.8 421,253 - H281DRAFT_02275 0.43 +0.2 421,253 - H281DRAFT_02275 0.43 -0.4 421,253 - H281DRAFT_02275 0.43 +0.7 421,295 + H281DRAFT_02275 0.48 -0.1 421,296 - H281DRAFT_02275 0.48 +0.4 421,296 - H281DRAFT_02275 0.48 +0.3 421,296 - H281DRAFT_02275 0.48 +0.2 421,297 + H281DRAFT_02275 0.48 -2.8 421,364 - H281DRAFT_02275 0.55 +0.8 421,368 + H281DRAFT_02275 0.56 +1.0 421,440 - H281DRAFT_02275 0.63 -0.7 421,496 - H281DRAFT_02275 0.70 +0.6 421,520 + H281DRAFT_02275 0.72 -0.0 421,521 - H281DRAFT_02275 0.72 -0.6 421,521 - H281DRAFT_02275 0.72 +1.4 421,740 + -0.8 421,750 + -0.3 421,751 - -0.3 421,914 - H281DRAFT_02276 0.16 +0.9 422,271 - H281DRAFT_02276 0.56 -0.2 422,347 + H281DRAFT_02276 0.64 +1.2 422,347 + H281DRAFT_02276 0.64 +1.4 422,348 - +2.6 422,348 - H281DRAFT_02276 0.64 +0.4 422,500 - H281DRAFT_02276 0.81 -0.3 422,647 - +0.0 422,668 + -0.7 422,712 + -0.3 422,713 - +1.3 422,713 - -1.6 422,770 + +0.2 423,120 + +0.1 423,120 + -0.5 423,164 + -3.5 423,164 + -0.8 423,164 + +0.3 423,324 + -0.7 423,324 + -1.4 423,325 - +0.3 423,478 + +0.0 423,520 + H281DRAFT_02278 0.13 -1.1 423,521 - H281DRAFT_02278 0.13 -1.0 423,544 + H281DRAFT_02278 0.15 +1.0 423,561 - H281DRAFT_02278 0.16 +0.0 423,573 - H281DRAFT_02278 0.17 +2.6 423,601 - H281DRAFT_02278 0.19 +0.0
Or see this region's nucleotide sequence