Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01678 and H281DRAFT_01679 are separated by 157 nucleotides H281DRAFT_01679 and H281DRAFT_01680 overlap by 4 nucleotides H281DRAFT_01680 and H281DRAFT_01681 overlap by 1 nucleotides H281DRAFT_01681 and H281DRAFT_01682 are separated by 2 nucleotides H281DRAFT_01682 and H281DRAFT_01683 overlap by 4 nucleotides
H281DRAFT_01678: H281DRAFT_01678 - Predicted dehydrogenase, at 561,748 to 562,800
_01678
H281DRAFT_01679: H281DRAFT_01679 - shikimate dehydrogenase (EC 1.1.1.25), at 562,958 to 563,791
_01679
H281DRAFT_01680: H281DRAFT_01680 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 563,788 to 565,011
_01680
H281DRAFT_01681: H281DRAFT_01681 - Acyl dehydratase, at 565,011 to 565,478
_01681
H281DRAFT_01682: H281DRAFT_01682 - Predicted enzyme related to lactoylglutathione lyase, at 565,481 to 565,873
_01682
H281DRAFT_01683: H281DRAFT_01683 - ketopantoate reductase (EC 1.1.1.169), at 565,870 to 566,820
_01683
Position (kb) 563
564
565
566 Strain fitness (log2 ratio) -2
-1
0
1 at 562.801 kb on - strand at 562.922 kb on + strand at 563.582 kb on + strand, within H281DRAFT_01679 at 563.691 kb on + strand, within H281DRAFT_01679 at 563.749 kb on + strand at 564.174 kb on + strand, within H281DRAFT_01680 at 564.175 kb on - strand, within H281DRAFT_01680 at 564.734 kb on - strand, within H281DRAFT_01680 at 564.834 kb on - strand, within H281DRAFT_01680 at 565.345 kb on - strand, within H281DRAFT_01681 at 565.405 kb on + strand, within H281DRAFT_01681 at 565.451 kb on - strand at 565.466 kb on + strand at 565.528 kb on + strand, within H281DRAFT_01682 at 565.529 kb on - strand, within H281DRAFT_01682 at 565.529 kb on - strand, within H281DRAFT_01682 at 565.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 562,801 - +0.0 562,922 + +0.9 563,582 + H281DRAFT_01679 0.75 -0.2 563,691 + H281DRAFT_01679 0.88 +1.0 563,749 + -0.3 564,174 + H281DRAFT_01680 0.32 -0.1 564,175 - H281DRAFT_01680 0.32 -1.0 564,734 - H281DRAFT_01680 0.77 +1.2 564,834 - H281DRAFT_01680 0.85 -0.2 565,345 - H281DRAFT_01681 0.71 +0.2 565,405 + H281DRAFT_01681 0.84 +1.6 565,451 - +0.6 565,466 + -0.5 565,528 + H281DRAFT_01682 0.12 -2.2 565,529 - H281DRAFT_01682 0.12 -0.4 565,529 - H281DRAFT_01682 0.12 +0.2 565,854 + +0.6
Or see this region's nucleotide sequence