Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01676 and H281DRAFT_01677 are separated by 102 nucleotides H281DRAFT_01677 and H281DRAFT_01678 are separated by 18 nucleotides H281DRAFT_01678 and H281DRAFT_01679 are separated by 157 nucleotides H281DRAFT_01679 and H281DRAFT_01680 overlap by 4 nucleotides
H281DRAFT_01676: H281DRAFT_01676 - transcriptional regulator, LysR family, at 560,284 to 561,189
_01676
H281DRAFT_01677: H281DRAFT_01677 - 3-dehydroquinate dehydratase, at 561,292 to 561,729
_01677
H281DRAFT_01678: H281DRAFT_01678 - Predicted dehydrogenase, at 561,748 to 562,800
_01678
H281DRAFT_01679: H281DRAFT_01679 - shikimate dehydrogenase (EC 1.1.1.25), at 562,958 to 563,791
_01679
H281DRAFT_01680: H281DRAFT_01680 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 563,788 to 565,011
_01680
Position (kb) 561
562
563 Strain fitness (log2 ratio) -1
0
1
2 at 561.022 kb on - strand, within H281DRAFT_01676 at 561.172 kb on + strand at 561.234 kb on - strand at 561.239 kb on + strand at 561.290 kb on + strand at 561.426 kb on + strand, within H281DRAFT_01677 at 561.483 kb on + strand, within H281DRAFT_01677 at 561.484 kb on - strand, within H281DRAFT_01677 at 561.484 kb on - strand, within H281DRAFT_01677 at 561.486 kb on - strand, within H281DRAFT_01677 at 561.529 kb on - strand, within H281DRAFT_01677 at 561.974 kb on + strand, within H281DRAFT_01678 at 562.031 kb on + strand, within H281DRAFT_01678 at 562.049 kb on + strand, within H281DRAFT_01678 at 562.049 kb on + strand, within H281DRAFT_01678 at 562.325 kb on + strand, within H281DRAFT_01678 at 562.746 kb on + strand at 562.801 kb on - strand at 562.922 kb on + strand at 563.582 kb on + strand, within H281DRAFT_01679 at 563.691 kb on + strand, within H281DRAFT_01679 at 563.749 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 561,022 - H281DRAFT_01676 0.81 -0.1 561,172 + +0.8 561,234 - -1.3 561,239 + -0.4 561,290 + +0.2 561,426 + H281DRAFT_01677 0.31 +1.0 561,483 + H281DRAFT_01677 0.44 -0.1 561,484 - H281DRAFT_01677 0.44 +2.0 561,484 - H281DRAFT_01677 0.44 +0.6 561,486 - H281DRAFT_01677 0.44 -0.5 561,529 - H281DRAFT_01677 0.54 +0.3 561,974 + H281DRAFT_01678 0.21 -0.3 562,031 + H281DRAFT_01678 0.27 +2.1 562,049 + H281DRAFT_01678 0.29 +1.1 562,049 + H281DRAFT_01678 0.29 -1.4 562,325 + H281DRAFT_01678 0.55 -0.2 562,746 + +0.1 562,801 - +0.0 562,922 + +0.9 563,582 + H281DRAFT_01679 0.75 -0.2 563,691 + H281DRAFT_01679 0.88 +1.0 563,749 + -0.3
Or see this region's nucleotide sequence