Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01400 and H281DRAFT_01401 are separated by 94 nucleotides H281DRAFT_01401 and H281DRAFT_01402 are separated by 60 nucleotides H281DRAFT_01402 and H281DRAFT_01403 are separated by 72 nucleotides
H281DRAFT_01400: H281DRAFT_01400 - cytochrome b561, at 255,869 to 256,429
_01400
H281DRAFT_01401: H281DRAFT_01401 - Polyisoprenoid-binding protein YceI, at 256,524 to 257,087
_01401
H281DRAFT_01402: H281DRAFT_01402 - Polyisoprenoid-binding protein YceI, at 257,148 to 257,726
_01402
H281DRAFT_01403: H281DRAFT_01403 - hypothetical protein, at 257,799 to 258,785
_01403
Position (kb) 257
258 Strain fitness (log2 ratio) -1
0
1
2 at 256.209 kb on - strand, within H281DRAFT_01400 at 256.209 kb on - strand, within H281DRAFT_01400 at 256.239 kb on - strand, within H281DRAFT_01400 at 256.755 kb on + strand, within H281DRAFT_01401 at 256.822 kb on - strand, within H281DRAFT_01401 at 257.670 kb on + strand at 258.054 kb on - strand, within H281DRAFT_01403 at 258.209 kb on - strand, within H281DRAFT_01403 at 258.411 kb on + strand, within H281DRAFT_01403
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 256,209 - H281DRAFT_01400 0.61 -1.0 256,209 - H281DRAFT_01400 0.61 +0.4 256,239 - H281DRAFT_01400 0.66 -1.3 256,755 + H281DRAFT_01401 0.41 -0.2 256,822 - H281DRAFT_01401 0.53 +1.9 257,670 + -0.1 258,054 - H281DRAFT_01403 0.26 +0.6 258,209 - H281DRAFT_01403 0.42 +0.4 258,411 + H281DRAFT_01403 0.62 +0.4
Or see this region's nucleotide sequence