Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01245 and H281DRAFT_01246 are separated by 144 nucleotides H281DRAFT_01246 and H281DRAFT_01247 are separated by 99 nucleotides H281DRAFT_01247 and H281DRAFT_01248 are separated by 49 nucleotides H281DRAFT_01248 and H281DRAFT_01249 are separated by 77 nucleotides
H281DRAFT_01245: H281DRAFT_01245 - arylsulfatase, at 81,680 to 83,638
_01245
H281DRAFT_01246: H281DRAFT_01246 - hypothetical protein, at 83,783 to 84,214
_01246
H281DRAFT_01247: H281DRAFT_01247 - esterase, PHB depolymerase family, at 84,314 to 85,417
_01247
H281DRAFT_01248: H281DRAFT_01248 - Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain, at 85,467 to 86,024
_01248
H281DRAFT_01249: H281DRAFT_01249 - hypothetical protein, at 86,102 to 86,503
_01249
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1
2 at 83.473 kb on - strand at 83.645 kb on - strand at 83.719 kb on + strand at 83.720 kb on - strand at 83.720 kb on - strand at 83.794 kb on + strand at 84.038 kb on - strand, within H281DRAFT_01246 at 84.385 kb on + strand at 84.387 kb on + strand at 84.388 kb on - strand at 84.578 kb on + strand, within H281DRAFT_01247 at 84.578 kb on + strand, within H281DRAFT_01247 at 84.578 kb on + strand, within H281DRAFT_01247 at 84.579 kb on - strand, within H281DRAFT_01247 at 84.828 kb on + strand, within H281DRAFT_01247 at 85.113 kb on + strand, within H281DRAFT_01247 at 85.114 kb on - strand, within H281DRAFT_01247 at 85.328 kb on + strand at 85.329 kb on - strand at 85.665 kb on + strand, within H281DRAFT_01248 at 86.040 kb on + strand at 86.041 kb on - strand at 86.160 kb on + strand, within H281DRAFT_01249 at 86.161 kb on - strand, within H281DRAFT_01249 at 86.161 kb on - strand, within H281DRAFT_01249 at 86.247 kb on + strand, within H281DRAFT_01249 at 86.247 kb on + strand, within H281DRAFT_01249 at 86.248 kb on - strand, within H281DRAFT_01249
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 83,473 - +2.1 83,645 - +1.0 83,719 + +0.2 83,720 - +0.4 83,720 - -1.0 83,794 + -1.6 84,038 - H281DRAFT_01246 0.59 -0.1 84,385 + -0.6 84,387 + +2.0 84,388 - -0.1 84,578 + H281DRAFT_01247 0.24 +0.1 84,578 + H281DRAFT_01247 0.24 +0.8 84,578 + H281DRAFT_01247 0.24 +0.3 84,579 - H281DRAFT_01247 0.24 -0.4 84,828 + H281DRAFT_01247 0.47 +1.0 85,113 + H281DRAFT_01247 0.72 +0.4 85,114 - H281DRAFT_01247 0.72 -1.6 85,328 + -0.6 85,329 - +0.3 85,665 + H281DRAFT_01248 0.35 +1.1 86,040 + -0.3 86,041 - -0.3 86,160 + H281DRAFT_01249 0.14 +0.4 86,161 - H281DRAFT_01249 0.15 -1.1 86,161 - H281DRAFT_01249 0.15 +0.8 86,247 + H281DRAFT_01249 0.36 +1.4 86,247 + H281DRAFT_01249 0.36 -0.3 86,248 - H281DRAFT_01249 0.36 -0.2
Or see this region's nucleotide sequence