Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01209 and H281DRAFT_01210 are separated by 30 nucleotides H281DRAFT_01210 and H281DRAFT_01211 are separated by 397 nucleotides H281DRAFT_01211 and H281DRAFT_01212 are separated by 244 nucleotides H281DRAFT_01212 and H281DRAFT_01213 are separated by 49 nucleotides H281DRAFT_01213 and H281DRAFT_01214 are separated by 29 nucleotides
H281DRAFT_01209: H281DRAFT_01209 - putative MFS transporter, AGZA family, xanthine/uracil permease, at 48,541 to 49,842
_01209
H281DRAFT_01210: H281DRAFT_01210 - Protein of unknown function (DUF1488), at 49,873 to 50,163
_01210
H281DRAFT_01211: H281DRAFT_01211 - Transcriptional regulator of acetoin/glycerol metabolism, at 50,561 to 52,537
_01211
H281DRAFT_01212: H281DRAFT_01212 - Ferredoxin, at 52,782 to 53,093
_01212
H281DRAFT_01213: H281DRAFT_01213 - Protein of unknown function (DUF1653), at 53,143 to 53,346
_01213
H281DRAFT_01214: H281DRAFT_01214 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 53,376 to 54,020
_01214
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -1
0
1
2
3 at 49.594 kb on + strand, within H281DRAFT_01209 at 49.697 kb on - strand, within H281DRAFT_01209 at 49.735 kb on + strand at 49.735 kb on + strand at 49.735 kb on + strand at 49.826 kb on - strand at 49.826 kb on - strand at 49.826 kb on - strand at 49.829 kb on + strand at 49.830 kb on - strand at 49.830 kb on - strand at 49.896 kb on - strand at 49.907 kb on + strand, within H281DRAFT_01210 at 50.129 kb on + strand, within H281DRAFT_01210 at 50.130 kb on - strand, within H281DRAFT_01210 at 50.261 kb on - strand at 50.261 kb on - strand at 50.470 kb on - strand at 50.470 kb on - strand at 50.531 kb on - strand at 50.726 kb on + strand at 50.728 kb on + strand at 50.989 kb on + strand, within H281DRAFT_01211 at 51.235 kb on + strand, within H281DRAFT_01211 at 51.441 kb on - strand, within H281DRAFT_01211 at 51.441 kb on - strand, within H281DRAFT_01211 at 51.793 kb on + strand, within H281DRAFT_01211 at 52.029 kb on - strand, within H281DRAFT_01211 at 52.029 kb on - strand, within H281DRAFT_01211 at 52.218 kb on + strand, within H281DRAFT_01211 at 52.218 kb on + strand, within H281DRAFT_01211 at 52.219 kb on - strand, within H281DRAFT_01211 at 52.219 kb on - strand, within H281DRAFT_01211 at 52.373 kb on - strand at 52.535 kb on + strand at 52.536 kb on - strand at 52.536 kb on - strand at 52.558 kb on + strand at 52.558 kb on + strand at 52.563 kb on + strand at 52.660 kb on + strand at 52.661 kb on - strand at 52.718 kb on - strand at 52.916 kb on + strand, within H281DRAFT_01212 at 52.916 kb on + strand, within H281DRAFT_01212 at 52.916 kb on + strand, within H281DRAFT_01212 at 52.917 kb on - strand, within H281DRAFT_01212 at 52.917 kb on - strand, within H281DRAFT_01212 at 52.964 kb on + strand, within H281DRAFT_01212 at 52.964 kb on + strand, within H281DRAFT_01212 at 52.965 kb on - strand, within H281DRAFT_01212 at 53.010 kb on + strand, within H281DRAFT_01212 at 53.010 kb on + strand, within H281DRAFT_01212 at 53.011 kb on - strand, within H281DRAFT_01212 at 53.011 kb on - strand at 53.092 kb on - strand at 53.304 kb on - strand, within H281DRAFT_01213 at 53.307 kb on + strand, within H281DRAFT_01213 at 53.308 kb on - strand, within H281DRAFT_01213 at 53.318 kb on + strand, within H281DRAFT_01213 at 53.319 kb on - strand, within H281DRAFT_01213 at 53.319 kb on - strand, within H281DRAFT_01213 at 53.409 kb on - strand at 53.410 kb on + strand at 53.513 kb on + strand, within H281DRAFT_01214 at 53.513 kb on + strand, within H281DRAFT_01214 at 53.514 kb on - strand, within H281DRAFT_01214 at 53.514 kb on - strand, within H281DRAFT_01214 at 53.514 kb on - strand, within H281DRAFT_01214
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 49,594 + H281DRAFT_01209 0.81 -0.6 49,697 - H281DRAFT_01209 0.89 -1.7 49,735 + -0.5 49,735 + +0.2 49,735 + +0.1 49,826 - +0.6 49,826 - +0.4 49,826 - -0.2 49,829 + +0.4 49,830 - -0.4 49,830 - -0.3 49,896 - -0.9 49,907 + H281DRAFT_01210 0.12 +1.1 50,129 + H281DRAFT_01210 0.88 -0.7 50,130 - H281DRAFT_01210 0.88 -0.4 50,261 - +0.0 50,261 - +0.2 50,470 - +0.3 50,470 - +0.0 50,531 - +0.7 50,726 + +1.2 50,728 + -1.0 50,989 + H281DRAFT_01211 0.22 -0.3 51,235 + H281DRAFT_01211 0.34 -0.6 51,441 - H281DRAFT_01211 0.45 +1.5 51,441 - H281DRAFT_01211 0.45 -0.0 51,793 + H281DRAFT_01211 0.62 +0.1 52,029 - H281DRAFT_01211 0.74 +0.3 52,029 - H281DRAFT_01211 0.74 -0.9 52,218 + H281DRAFT_01211 0.84 +0.7 52,218 + H281DRAFT_01211 0.84 +0.4 52,219 - H281DRAFT_01211 0.84 +2.0 52,219 - H281DRAFT_01211 0.84 +0.0 52,373 - -1.3 52,535 + +0.1 52,536 - -1.6 52,536 - -0.7 52,558 + +1.5 52,558 + -0.3 52,563 + -0.2 52,660 + +0.3 52,661 - +2.3 52,718 - -0.6 52,916 + H281DRAFT_01212 0.43 -0.3 52,916 + H281DRAFT_01212 0.43 +0.7 52,916 + H281DRAFT_01212 0.43 +0.7 52,917 - H281DRAFT_01212 0.43 +0.2 52,917 - H281DRAFT_01212 0.43 +0.1 52,964 + H281DRAFT_01212 0.58 +0.4 52,964 + H281DRAFT_01212 0.58 +0.7 52,965 - H281DRAFT_01212 0.59 +0.9 53,010 + H281DRAFT_01212 0.73 -0.1 53,010 + H281DRAFT_01212 0.73 -0.2 53,011 - H281DRAFT_01212 0.73 -0.0 53,011 - -1.6 53,092 - +1.4 53,304 - H281DRAFT_01213 0.79 +0.3 53,307 + H281DRAFT_01213 0.80 -0.5 53,308 - H281DRAFT_01213 0.81 -0.1 53,318 + H281DRAFT_01213 0.86 +0.1 53,319 - H281DRAFT_01213 0.86 -0.3 53,319 - H281DRAFT_01213 0.86 -0.4 53,409 - +2.7 53,410 + +0.7 53,513 + H281DRAFT_01214 0.21 +1.0 53,513 + H281DRAFT_01214 0.21 +2.9 53,514 - H281DRAFT_01214 0.21 +0.1 53,514 - H281DRAFT_01214 0.21 +0.2 53,514 - H281DRAFT_01214 0.21 +0.8
Or see this region's nucleotide sequence