Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00846 and H281DRAFT_00847 are separated by 130 nucleotides H281DRAFT_00847 and H281DRAFT_00848 are separated by 38 nucleotides
H281DRAFT_00846: H281DRAFT_00846 - 23S rRNA m(5)U-1939 methyltransferase, at 935,026 to 936,456
_00846
H281DRAFT_00847: H281DRAFT_00847 - Beta-barrel assembly machine subunit BamD, at 936,587 to 937,447
_00847
H281DRAFT_00848: H281DRAFT_00848 - ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-), at 937,486 to 938,763
_00848
Position (kb) 936
937
938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 935.589 kb on + strand, within H281DRAFT_00846 at 935.870 kb on - strand, within H281DRAFT_00846 at 935.870 kb on - strand, within H281DRAFT_00846 at 935.885 kb on - strand, within H281DRAFT_00846 at 935.967 kb on - strand, within H281DRAFT_00846 at 936.062 kb on + strand, within H281DRAFT_00846 at 936.062 kb on + strand, within H281DRAFT_00846 at 936.062 kb on + strand, within H281DRAFT_00846 at 936.063 kb on - strand, within H281DRAFT_00846 at 936.063 kb on - strand, within H281DRAFT_00846 at 936.063 kb on - strand, within H281DRAFT_00846 at 936.303 kb on + strand, within H281DRAFT_00846 at 936.304 kb on - strand, within H281DRAFT_00846 at 936.304 kb on - strand, within H281DRAFT_00846 at 936.310 kb on + strand, within H281DRAFT_00846 at 936.310 kb on + strand, within H281DRAFT_00846 at 936.311 kb on - strand, within H281DRAFT_00846 at 936.491 kb on + strand at 936.492 kb on - strand at 936.536 kb on + strand at 936.536 kb on + strand at 936.536 kb on + strand at 936.536 kb on + strand at 936.536 kb on + strand at 936.537 kb on - strand at 936.588 kb on + strand at 936.589 kb on - strand at 936.639 kb on + strand at 937.464 kb on - strand at 937.501 kb on - strand at 937.544 kb on - strand at 937.544 kb on - strand at 937.544 kb on - strand at 937.545 kb on + strand at 937.550 kb on + strand at 937.550 kb on + strand at 937.551 kb on - strand at 938.440 kb on + strand, within H281DRAFT_00848 at 938.441 kb on - strand, within H281DRAFT_00848
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 935,589 + H281DRAFT_00846 0.39 -1.3 935,870 - H281DRAFT_00846 0.59 +1.1 935,870 - H281DRAFT_00846 0.59 -0.2 935,885 - H281DRAFT_00846 0.60 -0.2 935,967 - H281DRAFT_00846 0.66 +0.2 936,062 + H281DRAFT_00846 0.72 +0.1 936,062 + H281DRAFT_00846 0.72 +0.1 936,062 + H281DRAFT_00846 0.72 -2.1 936,063 - H281DRAFT_00846 0.72 +1.1 936,063 - H281DRAFT_00846 0.72 +0.5 936,063 - H281DRAFT_00846 0.72 -0.4 936,303 + H281DRAFT_00846 0.89 -0.1 936,304 - H281DRAFT_00846 0.89 -0.4 936,304 - H281DRAFT_00846 0.89 -0.4 936,310 + H281DRAFT_00846 0.90 +0.3 936,310 + H281DRAFT_00846 0.90 +0.4 936,311 - H281DRAFT_00846 0.90 -1.1 936,491 + -0.2 936,492 - +0.4 936,536 + +0.1 936,536 + -0.5 936,536 + +0.3 936,536 + +0.8 936,536 + +0.4 936,537 - +1.0 936,588 + +0.3 936,589 - -1.4 936,639 + -0.4 937,464 - -0.0 937,501 - +0.9 937,544 - -0.6 937,544 - -0.6 937,544 - -0.9 937,545 + -1.2 937,550 + +1.8 937,550 + -0.7 937,551 - +2.1 938,440 + H281DRAFT_00848 0.75 -1.4 938,441 - H281DRAFT_00848 0.75 -1.7
Or see this region's nucleotide sequence