Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00665 and H281DRAFT_00666 are separated by 331 nucleotides H281DRAFT_00666 and H281DRAFT_00667 overlap by 4 nucleotides
H281DRAFT_00665: H281DRAFT_00665 - assimilatory nitrate reductase (NADH) alpha subunit apoprotein (EC 1.7.1.1), at 744,440 to 747,280
_00665
H281DRAFT_00666: H281DRAFT_00666 - altronate hydrolase, at 747,612 to 749,168
_00666
H281DRAFT_00667: H281DRAFT_00667 - Sugar phosphate permease, at 749,165 to 750,451
_00667
Position (kb) 747
748
749
750 Strain fitness (log2 ratio) -2
-1
0
1 at 746.756 kb on + strand, within H281DRAFT_00665 at 746.756 kb on + strand, within H281DRAFT_00665 at 747.426 kb on + strand at 747.773 kb on + strand, within H281DRAFT_00666 at 748.120 kb on + strand, within H281DRAFT_00666 at 748.120 kb on + strand, within H281DRAFT_00666 at 748.636 kb on - strand, within H281DRAFT_00666 at 748.775 kb on - strand, within H281DRAFT_00666 at 748.947 kb on + strand, within H281DRAFT_00666 at 749.169 kb on - strand at 749.419 kb on + strand, within H281DRAFT_00667 at 749.508 kb on + strand, within H281DRAFT_00667 at 749.509 kb on - strand, within H281DRAFT_00667 at 749.725 kb on - strand, within H281DRAFT_00667 at 749.740 kb on + strand, within H281DRAFT_00667 at 749.741 kb on - strand, within H281DRAFT_00667 at 749.741 kb on - strand, within H281DRAFT_00667 at 750.115 kb on - strand, within H281DRAFT_00667
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 746,756 + H281DRAFT_00665 0.82 -1.2 746,756 + H281DRAFT_00665 0.82 -0.9 747,426 + +0.7 747,773 + H281DRAFT_00666 0.10 -0.4 748,120 + H281DRAFT_00666 0.33 -0.3 748,120 + H281DRAFT_00666 0.33 +1.2 748,636 - H281DRAFT_00666 0.66 -1.4 748,775 - H281DRAFT_00666 0.75 +0.5 748,947 + H281DRAFT_00666 0.86 -1.0 749,169 - -2.3 749,419 + H281DRAFT_00667 0.20 -1.2 749,508 + H281DRAFT_00667 0.27 +0.6 749,509 - H281DRAFT_00667 0.27 +0.8 749,725 - H281DRAFT_00667 0.44 +0.3 749,740 + H281DRAFT_00667 0.45 +0.7 749,741 - H281DRAFT_00667 0.45 -0.6 749,741 - H281DRAFT_00667 0.45 +0.5 750,115 - H281DRAFT_00667 0.74 -0.0
Or see this region's nucleotide sequence