Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00071 and H281DRAFT_00072 are separated by 861 nucleotides H281DRAFT_00072 and H281DRAFT_00073 overlap by 50 nucleotides H281DRAFT_00073 and H281DRAFT_00074 are separated by 292 nucleotides
H281DRAFT_00071: H281DRAFT_00071 - Integrase, at 71,866 to 72,945
_00071
H281DRAFT_00072: H281DRAFT_00072 - hypothetical protein, at 73,807 to 74,418
_00072
H281DRAFT_00073: H281DRAFT_00073 - hypothetical protein, at 74,369 to 74,494
_00073
H281DRAFT_00074: H281DRAFT_00074 - UDP-galactose 4-epimerase, at 74,787 to 75,809
_00074
Position (kb) 73
74
75 Strain fitness (log2 ratio) -1
0
1
2
3 at 72.833 kb on + strand, within H281DRAFT_00071 at 72.939 kb on + strand at 72.939 kb on + strand at 72.946 kb on - strand at 72.980 kb on + strand at 72.981 kb on - strand at 72.981 kb on - strand at 72.981 kb on - strand at 73.122 kb on + strand at 73.122 kb on + strand at 73.182 kb on - strand at 73.251 kb on - strand at 73.251 kb on - strand at 73.272 kb on + strand at 73.273 kb on - strand at 73.339 kb on + strand at 73.339 kb on + strand at 73.456 kb on + strand at 73.456 kb on + strand at 73.457 kb on - strand at 73.472 kb on + strand at 73.473 kb on - strand at 73.488 kb on - strand at 73.488 kb on - strand at 73.570 kb on + strand at 73.570 kb on + strand at 73.570 kb on + strand at 73.571 kb on - strand at 73.641 kb on + strand at 73.644 kb on - strand at 73.666 kb on + strand at 73.720 kb on - strand at 73.851 kb on - strand at 73.983 kb on - strand, within H281DRAFT_00072 at 74.107 kb on + strand, within H281DRAFT_00072 at 74.107 kb on + strand, within H281DRAFT_00072 at 74.108 kb on - strand, within H281DRAFT_00072 at 74.108 kb on - strand, within H281DRAFT_00072 at 74.327 kb on - strand, within H281DRAFT_00072 at 74.385 kb on + strand at 74.385 kb on + strand at 74.399 kb on - strand at 74.416 kb on + strand at 74.417 kb on - strand at 74.451 kb on + strand, within H281DRAFT_00073 at 74.620 kb on + strand at 74.620 kb on + strand at 74.646 kb on + strand at 74.647 kb on - strand at 74.647 kb on - strand at 75.101 kb on + strand, within H281DRAFT_00074 at 75.102 kb on - strand, within H281DRAFT_00074 at 75.102 kb on - strand, within H281DRAFT_00074 at 75.193 kb on + strand, within H281DRAFT_00074 at 75.416 kb on - strand, within H281DRAFT_00074
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM remove 72,833 + H281DRAFT_00071 0.90 +0.4 72,939 + -0.4 72,939 + -1.5 72,946 - +0.4 72,980 + -0.5 72,981 - -0.0 72,981 - -0.3 72,981 - +1.7 73,122 + +0.8 73,122 + -0.6 73,182 - +1.3 73,251 - +0.7 73,251 - +1.6 73,272 + -0.4 73,273 - -0.7 73,339 + +1.1 73,339 + +0.1 73,456 + +1.0 73,456 + -0.3 73,457 - -0.8 73,472 + +0.4 73,473 - +0.6 73,488 - -0.1 73,488 - -0.3 73,570 + +0.4 73,570 + +0.7 73,570 + -0.7 73,571 - +0.4 73,641 + -0.3 73,644 - -1.3 73,666 + +0.4 73,720 - +1.5 73,851 - +0.8 73,983 - H281DRAFT_00072 0.29 -1.6 74,107 + H281DRAFT_00072 0.49 -0.6 74,107 + H281DRAFT_00072 0.49 -0.9 74,108 - H281DRAFT_00072 0.49 +1.6 74,108 - H281DRAFT_00072 0.49 +0.7 74,327 - H281DRAFT_00072 0.85 -0.3 74,385 + +0.0 74,385 + -0.3 74,399 - -1.7 74,416 + +0.2 74,417 - -0.9 74,451 + H281DRAFT_00073 0.65 +0.9 74,620 + -0.4 74,620 + +0.3 74,646 + -0.7 74,647 - -0.0 74,647 - +0.5 75,101 + H281DRAFT_00074 0.31 -0.9 75,102 - H281DRAFT_00074 0.31 +3.7 75,102 - H281DRAFT_00074 0.31 -1.1 75,193 + H281DRAFT_00074 0.40 +2.7 75,416 - H281DRAFT_00074 0.61 -1.3
Or see this region's nucleotide sequence