Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_615

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_614 and Ac3H11_615 are separated by 99 nucleotidesAc3H11_615 and Ac3H11_616 are separated by 191 nucleotides Ac3H11_614 - L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data), at 53,977 to 54,819 _614 Ac3H11_615 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) (from data), at 54,919 to 55,869 _615 Ac3H11_616 - Aldose 1-epimerase, at 56,061 to 57,002 _616 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.260 kb on + strand, within Ac3H11_614at 54.260 kb on + strand, within Ac3H11_614at 54.260 kb on + strand, within Ac3H11_614at 54.261 kb on - strand, within Ac3H11_614at 54.261 kb on - strand, within Ac3H11_614at 54.261 kb on - strand, within Ac3H11_614at 54.261 kb on - strand, within Ac3H11_614at 54.261 kb on - strand, within Ac3H11_614at 54.276 kb on + strand, within Ac3H11_614at 54.404 kb on + strand, within Ac3H11_614at 54.405 kb on - strand, within Ac3H11_614at 54.405 kb on - strand, within Ac3H11_614at 54.407 kb on + strand, within Ac3H11_614at 54.407 kb on + strand, within Ac3H11_614at 54.408 kb on - strand, within Ac3H11_614at 54.432 kb on + strand, within Ac3H11_614at 54.433 kb on - strand, within Ac3H11_614at 54.433 kb on - strand, within Ac3H11_614at 54.858 kb on + strandat 54.896 kb on - strandat 55.369 kb on + strand, within Ac3H11_615at 55.370 kb on - strand, within Ac3H11_615at 55.370 kb on - strand, within Ac3H11_615at 55.498 kb on + strand, within Ac3H11_615at 55.498 kb on + strand, within Ac3H11_615at 55.505 kb on - strand, within Ac3H11_615at 55.918 kb on + strandat 55.919 kb on - strandat 55.925 kb on + strandat 56.133 kb on - strandat 56.422 kb on + strand, within Ac3H11_616at 56.422 kb on + strand, within Ac3H11_616at 56.422 kb on + strand, within Ac3H11_616at 56.423 kb on - strand, within Ac3H11_616at 56.423 kb on - strand, within Ac3H11_616at 56.423 kb on - strand, within Ac3H11_616at 56.423 kb on - strand, within Ac3H11_616at 56.423 kb on - strand, within Ac3H11_616at 56.451 kb on + strand, within Ac3H11_616at 56.458 kb on - strand, within Ac3H11_616at 56.592 kb on - strand, within Ac3H11_616at 56.724 kb on + strand, within Ac3H11_616at 56.724 kb on + strand, within Ac3H11_616at 56.829 kb on + strand, within Ac3H11_616at 56.829 kb on + strand, within Ac3H11_616at 56.829 kb on + strand, within Ac3H11_616at 56.830 kb on - strand, within Ac3H11_616at 56.841 kb on + strand, within Ac3H11_616at 56.842 kb on - strand, within Ac3H11_616

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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54,260 + Ac3H11_614 0.34 -2.5
54,260 + Ac3H11_614 0.34 -0.5
54,260 + Ac3H11_614 0.34 -2.2
54,261 - Ac3H11_614 0.34 -0.5
54,261 - Ac3H11_614 0.34 -0.5
54,261 - Ac3H11_614 0.34 +0.6
54,261 - Ac3H11_614 0.34 +0.3
54,261 - Ac3H11_614 0.34 -0.5
54,276 + Ac3H11_614 0.35 -0.6
54,404 + Ac3H11_614 0.51 +1.5
54,405 - Ac3H11_614 0.51 +0.3
54,405 - Ac3H11_614 0.51 -1.4
54,407 + Ac3H11_614 0.51 +0.1
54,407 + Ac3H11_614 0.51 -1.2
54,408 - Ac3H11_614 0.51 -1.6
54,432 + Ac3H11_614 0.54 -0.2
54,433 - Ac3H11_614 0.54 +0.1
54,433 - Ac3H11_614 0.54 -0.4
54,858 + -0.4
54,896 - -0.4
55,369 + Ac3H11_615 0.47 +1.6
55,370 - Ac3H11_615 0.47 +0.2
55,370 - Ac3H11_615 0.47 +0.1
55,498 + Ac3H11_615 0.61 -1.7
55,498 + Ac3H11_615 0.61 +1.4
55,505 - Ac3H11_615 0.62 -0.3
55,918 + -0.1
55,919 - +0.3
55,925 + -0.5
56,133 - -2.7
56,422 + Ac3H11_616 0.38 -0.0
56,422 + Ac3H11_616 0.38 +0.0
56,422 + Ac3H11_616 0.38 +0.3
56,423 - Ac3H11_616 0.38 -0.5
56,423 - Ac3H11_616 0.38 -0.3
56,423 - Ac3H11_616 0.38 +0.6
56,423 - Ac3H11_616 0.38 -0.9
56,423 - Ac3H11_616 0.38 +0.0
56,451 + Ac3H11_616 0.41 +0.6
56,458 - Ac3H11_616 0.42 +0.2
56,592 - Ac3H11_616 0.56 +0.6
56,724 + Ac3H11_616 0.70 +0.0
56,724 + Ac3H11_616 0.70 +0.3
56,829 + Ac3H11_616 0.82 +0.1
56,829 + Ac3H11_616 0.82 +0.0
56,829 + Ac3H11_616 0.82 +0.1
56,830 - Ac3H11_616 0.82 +0.7
56,841 + Ac3H11_616 0.83 -0.7
56,842 - Ac3H11_616 0.83 -2.4

Or see this region's nucleotide sequence