Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_504

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_503 and Ac3H11_504 are separated by 66 nucleotidesAc3H11_504 and Ac3H11_505 are separated by 125 nucleotidesAc3H11_505 and Ac3H11_506 are separated by 184 nucleotides Ac3H11_503 - Outer membrane protein assembly factor YaeT precursor, at 198,630 to 200,024 _503 Ac3H11_504 - FIG00348850: hypothetical protein, at 200,091 to 200,912 _504 Ac3H11_505 - Transcriptional regulator, TetR family, at 201,038 to 201,643 _505 Ac3H11_506 - biphenyl-2,3-diol 1,2-dioxygenase III-related protein, at 201,828 to 202,214 _506 Position (kb) 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 199.507 kb on + strand, within Ac3H11_503at 199.507 kb on + strand, within Ac3H11_503at 199.529 kb on + strand, within Ac3H11_503at 199.530 kb on - strand, within Ac3H11_503at 199.530 kb on - strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.621 kb on + strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.622 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.682 kb on - strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.701 kb on + strand, within Ac3H11_503at 199.702 kb on - strand, within Ac3H11_503at 199.702 kb on - strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.801 kb on + strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.802 kb on - strand, within Ac3H11_503at 199.808 kb on - strand, within Ac3H11_503at 199.808 kb on - strand, within Ac3H11_503at 199.808 kb on - strand, within Ac3H11_503at 200.113 kb on + strandat 200.113 kb on + strandat 200.113 kb on + strandat 200.114 kb on - strandat 200.114 kb on - strandat 200.191 kb on + strand, within Ac3H11_504at 200.192 kb on - strand, within Ac3H11_504at 200.192 kb on - strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.399 kb on - strand, within Ac3H11_504at 200.399 kb on - strand, within Ac3H11_504at 200.952 kb on + strandat 200.952 kb on + strandat 200.953 kb on - strandat 200.953 kb on - strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.977 kb on - strandat 200.998 kb on - strandat 201.007 kb on + strandat 201.007 kb on + strandat 201.008 kb on - strandat 201.011 kb on + strandat 201.027 kb on + strandat 201.128 kb on + strand, within Ac3H11_505at 201.128 kb on + strand, within Ac3H11_505at 201.128 kb on + strand, within Ac3H11_505at 201.129 kb on - strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.189 kb on - strand, within Ac3H11_505at 201.189 kb on - strand, within Ac3H11_505at 201.230 kb on + strand, within Ac3H11_505at 201.230 kb on + strand, within Ac3H11_505at 201.231 kb on - strand, within Ac3H11_505at 201.231 kb on - strand, within Ac3H11_505at 201.231 kb on - strand, within Ac3H11_505at 201.326 kb on + strand, within Ac3H11_505at 201.326 kb on + strand, within Ac3H11_505at 201.327 kb on - strand, within Ac3H11_505at 201.831 kb on + strandat 201.831 kb on + strandat 201.831 kb on + strandat 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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199,507 + Ac3H11_503 0.63 +0.6
199,507 + Ac3H11_503 0.63 +0.6
199,529 + Ac3H11_503 0.64 -0.6
199,530 - Ac3H11_503 0.65 -0.3
199,530 - Ac3H11_503 0.65 +0.2
199,621 + Ac3H11_503 0.71 -0.6
199,621 + Ac3H11_503 0.71 +0.8
199,621 + Ac3H11_503 0.71 +0.2
199,621 + Ac3H11_503 0.71 +0.4
199,622 - Ac3H11_503 0.71 +0.8
199,622 - Ac3H11_503 0.71 -0.5
199,622 - Ac3H11_503 0.71 +0.3
199,622 - Ac3H11_503 0.71 +0.4
199,622 - Ac3H11_503 0.71 -1.2
199,622 - Ac3H11_503 0.71 -0.1
199,622 - Ac3H11_503 0.71 -0.2
199,622 - Ac3H11_503 0.71 -0.5
199,682 - Ac3H11_503 0.75 -1.1
199,682 - Ac3H11_503 0.75 -2.3
199,682 - Ac3H11_503 0.75 +0.5
199,682 - Ac3H11_503 0.75 +0.8
199,701 + Ac3H11_503 0.77 -0.3
199,701 + Ac3H11_503 0.77 -0.9
199,701 + Ac3H11_503 0.77 +0.1
199,701 + Ac3H11_503 0.77 -0.2
199,702 - Ac3H11_503 0.77 +0.5
199,702 - Ac3H11_503 0.77 +0.1
199,801 + Ac3H11_503 0.84 -0.9
199,801 + Ac3H11_503 0.84 +0.2
199,801 + Ac3H11_503 0.84 +1.1
199,801 + Ac3H11_503 0.84 +0.9
199,802 - Ac3H11_503 0.84 -0.4
199,802 - Ac3H11_503 0.84 -0.4
199,802 - Ac3H11_503 0.84 +0.9
199,802 - Ac3H11_503 0.84 +2.1
199,802 - Ac3H11_503 0.84 +0.8
199,802 - Ac3H11_503 0.84 -0.4
199,802 - Ac3H11_503 0.84 -0.6
199,802 - Ac3H11_503 0.84 +0.0
199,802 - Ac3H11_503 0.84 -0.3
199,802 - Ac3H11_503 0.84 -0.0
199,808 - Ac3H11_503 0.84 +0.6
199,808 - Ac3H11_503 0.84 +0.9
199,808 - Ac3H11_503 0.84 +0.0
200,113 + +0.8
200,113 + -0.4
200,113 + +0.6
200,114 - -0.9
200,114 - +1.5
200,191 + Ac3H11_504 0.12 +0.6
200,192 - Ac3H11_504 0.12 -0.2
200,192 - Ac3H11_504 0.12 -0.8
200,398 + Ac3H11_504 0.37 +0.5
200,398 + Ac3H11_504 0.37 -0.3
200,398 + Ac3H11_504 0.37 -0.0
200,399 - Ac3H11_504 0.37 +0.6
200,399 - Ac3H11_504 0.37 +0.6
200,952 + +1.3
200,952 + -0.3
200,953 - +1.0
200,953 - +0.4
200,976 + -0.5
200,976 + +0.7
200,976 + +0.4
200,976 + -0.3
200,976 + -0.7
200,976 + +2.7
200,977 - -0.2
200,998 - +0.4
201,007 + +0.6
201,007 + -0.9
201,008 - +2.0
201,011 + -1.6
201,027 + +1.0
201,128 + Ac3H11_505 0.15 -1.4
201,128 + Ac3H11_505 0.15 -1.1
201,128 + Ac3H11_505 0.15 -2.4
201,129 - Ac3H11_505 0.15 -0.8
201,188 + Ac3H11_505 0.25 +0.1
201,188 + Ac3H11_505 0.25 -1.6
201,188 + Ac3H11_505 0.25 +0.0
201,188 + Ac3H11_505 0.25 -3.1
201,188 + Ac3H11_505 0.25 -2.3
201,189 - Ac3H11_505 0.25 +0.4
201,189 - Ac3H11_505 0.25 -2.4
201,230 + Ac3H11_505 0.32 -0.4
201,230 + Ac3H11_505 0.32 +0.7
201,231 - Ac3H11_505 0.32 -1.5
201,231 - Ac3H11_505 0.32 -1.6
201,231 - Ac3H11_505 0.32 -1.4
201,326 + Ac3H11_505 0.48 -0.3
201,326 + Ac3H11_505 0.48 -1.0
201,327 - Ac3H11_505 0.48 +0.1
201,831 + -0.1
201,831 + +0.3
201,831 + +0.4
201,871 + Ac3H11_506 0.11 +0.8
201,871 + Ac3H11_506 0.11 +0.4
201,871 + Ac3H11_506 0.11 -0.4
201,871 + Ac3H11_506 0.11 +0.2
201,871 + Ac3H11_506 0.11 -0.3
201,872 - Ac3H11_506 0.11 +0.4
201,872 - Ac3H11_506 0.11 -0.2
201,872 - Ac3H11_506 0.11 +0.5
201,872 - Ac3H11_506 0.11 -1.3
201,872 - Ac3H11_506 0.11 -0.7
201,872 - Ac3H11_506 0.11 -1.1
201,872 - Ac3H11_506 0.11 +0.3
201,875 + Ac3H11_506 0.12 +0.3
201,875 + Ac3H11_506 0.12 +0.6
201,875 + Ac3H11_506 0.12 -0.7
201,875 + Ac3H11_506 0.12 -0.0
201,876 - Ac3H11_506 0.12 -0.7
201,876 - Ac3H11_506 0.12 -0.6
201,876 - Ac3H11_506 0.12 +0.1
201,876 - Ac3H11_506 0.12 +0.5
201,876 - Ac3H11_506 0.12 +0.5
201,876 - Ac3H11_506 0.12 +1.7
201,876 - Ac3H11_506 0.12 +0.0
201,876 - Ac3H11_506 0.12 +0.5
201,876 - Ac3H11_506 0.12 -0.9
201,876 - Ac3H11_506 0.12 -0.9
201,877 + Ac3H11_506 0.13 +0.5
201,877 + Ac3H11_506 0.13 -1.9
201,877 + Ac3H11_506 0.13 +0.6
201,877 + Ac3H11_506 0.13 -0.8
201,877 + Ac3H11_506 0.13 +0.5
201,877 + Ac3H11_506 0.13 +0.5
201,877 + Ac3H11_506 0.13 -0.8
201,877 + Ac3H11_506 0.13 +0.4
201,878 - Ac3H11_506 0.13 -0.1
201,878 - Ac3H11_506 0.13 -1.1
201,878 - Ac3H11_506 0.13 -0.4
201,878 - Ac3H11_506 0.13 +0.1
201,878 - Ac3H11_506 0.13 +0.5
201,878 - Ac3H11_506 0.13 +0.6

Or see this region's nucleotide sequence