Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3958

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3957 and Ac3H11_3958 are separated by 64 nucleotidesAc3H11_3958 and Ac3H11_3959 are separated by 44 nucleotidesAc3H11_3959 and Ac3H11_3960 are separated by 149 nucleotides Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628 _3957 Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592 _3958 Ac3H11_3959 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 183,637 to 184,365 _3959 Ac3H11_3960 - hypothetical protein, at 184,515 to 184,664 _3960 Ac3H11_3961 - Aldehyde dehydrogenase B (EC 1.2.1.22), at 184,560 to 186,098 _3961 Position (kb) 182 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 181.718 kb on + strandat 181.718 kb on + strandat 181.719 kb on - strandat 181.778 kb on + strand, within Ac3H11_3957at 181.778 kb on + strand, within Ac3H11_3957at 181.778 kb on + strand, within Ac3H11_3957at 181.934 kb on + strand, within Ac3H11_3957at 181.934 kb on + strand, within Ac3H11_3957at 182.159 kb on + strand, within Ac3H11_3957at 182.160 kb on - strand, within Ac3H11_3957at 182.160 kb on - strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.271 kb on + strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.272 kb on - strand, within Ac3H11_3957at 182.734 kb on - strandat 182.734 kb on - strandat 182.734 kb on - strandat 182.734 kb on - strandat 182.880 kb on + strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.881 kb on - strand, within Ac3H11_3958at 182.946 kb on + strand, within Ac3H11_3958at 182.946 kb on + strand, within Ac3H11_3958at 182.946 kb on + strand, within Ac3H11_3958at 182.947 kb on - strand, within Ac3H11_3958at 182.947 kb on - strand, within Ac3H11_3958at 182.947 kb on - strand, within Ac3H11_3958at 182.960 kb on - strand, within Ac3H11_3958at 183.042 kb on + strand, within Ac3H11_3958at 183.084 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.207 kb on + strand, within Ac3H11_3958at 183.216 kb on + strand, within Ac3H11_3958at 183.217 kb on - strand, within Ac3H11_3958at 183.414 kb on + strand, within Ac3H11_3958at 183.415 kb on - strand, within Ac3H11_3958at 183.539 kb on + strandat 183.539 kb on + strandat 183.595 kb on + strandat 183.595 kb on + strandat 183.595 kb on + strandat 183.596 kb on - strandat 183.954 kb on + strand, within Ac3H11_3959at 183.954 kb on + strand, within Ac3H11_3959at 184.222 kb on + strand, within Ac3H11_3959at 184.222 kb on + strand, within Ac3H11_3959at 184.223 kb on - strand, within Ac3H11_3959at 184.258 kb on + strand, within Ac3H11_3959at 184.258 kb on + strand, within Ac3H11_3959at 184.258 kb on + strand, within Ac3H11_3959at 184.258 kb on + strand, within Ac3H11_3959at 184.259 kb on - strand, within Ac3H11_3959at 184.259 kb on - strand, within Ac3H11_3959at 184.460 kb on + strandat 184.460 kb on + strandat 184.460 kb on + strandat 184.460 kb on + strandat 184.460 kb on + strandat 184.461 kb on - strandat 184.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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181,718 + +1.1
181,718 + -0.5
181,719 - +0.6
181,778 + Ac3H11_3957 0.14 -0.2
181,778 + Ac3H11_3957 0.14 -1.2
181,778 + Ac3H11_3957 0.14 +1.2
181,934 + Ac3H11_3957 0.30 -0.2
181,934 + Ac3H11_3957 0.30 +0.3
182,159 + Ac3H11_3957 0.53 +0.9
182,160 - Ac3H11_3957 0.53 +0.2
182,160 - Ac3H11_3957 0.53 -1.5
182,271 + Ac3H11_3957 0.64 +0.4
182,271 + Ac3H11_3957 0.64 +1.8
182,271 + Ac3H11_3957 0.64 +0.7
182,271 + Ac3H11_3957 0.64 -0.6
182,271 + Ac3H11_3957 0.64 +0.4
182,271 + Ac3H11_3957 0.64 -1.8
182,272 - Ac3H11_3957 0.64 +0.6
182,272 - Ac3H11_3957 0.64 -0.1
182,272 - Ac3H11_3957 0.64 +1.1
182,272 - Ac3H11_3957 0.64 +0.1
182,734 - -3.2
182,734 - -0.6
182,734 - +0.3
182,734 - +0.1
182,880 + Ac3H11_3958 0.21 -1.3
182,881 - Ac3H11_3958 0.21 -0.0
182,881 - Ac3H11_3958 0.21 -1.5
182,881 - Ac3H11_3958 0.21 +0.2
182,881 - Ac3H11_3958 0.21 -1.1
182,881 - Ac3H11_3958 0.21 -0.5
182,946 + Ac3H11_3958 0.28 -0.2
182,946 + Ac3H11_3958 0.28 -1.0
182,946 + Ac3H11_3958 0.28 +0.5
182,947 - Ac3H11_3958 0.28 -1.0
182,947 - Ac3H11_3958 0.28 -0.8
182,947 - Ac3H11_3958 0.28 +0.6
182,960 - Ac3H11_3958 0.30 -1.5
183,042 + Ac3H11_3958 0.39 +0.4
183,084 + Ac3H11_3958 0.43 -2.3
183,207 + Ac3H11_3958 0.57 -0.2
183,207 + Ac3H11_3958 0.57 -2.8
183,207 + Ac3H11_3958 0.57 +0.2
183,207 + Ac3H11_3958 0.57 -1.2
183,216 + Ac3H11_3958 0.58 -0.2
183,217 - Ac3H11_3958 0.58 +0.4
183,414 + Ac3H11_3958 0.80 +0.5
183,415 - Ac3H11_3958 0.80 -1.2
183,539 + -0.3
183,539 + -2.2
183,595 + -0.6
183,595 + -0.7
183,595 + -1.1
183,596 - -1.8
183,954 + Ac3H11_3959 0.43 -2.8
183,954 + Ac3H11_3959 0.43 -1.4
184,222 + Ac3H11_3959 0.80 -1.7
184,222 + Ac3H11_3959 0.80 +0.0
184,223 - Ac3H11_3959 0.80 -0.5
184,258 + Ac3H11_3959 0.85 -3.6
184,258 + Ac3H11_3959 0.85 -0.0
184,258 + Ac3H11_3959 0.85 +0.7
184,258 + Ac3H11_3959 0.85 -2.3
184,259 - Ac3H11_3959 0.85 -0.2
184,259 - Ac3H11_3959 0.85 -2.2
184,460 + -2.1
184,460 + -0.1
184,460 + +0.0
184,460 + +0.1
184,460 + +0.3
184,461 - -1.8
184,465 - -0.4

Or see this region's nucleotide sequence