Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3955 and Ac3H11_3956 are separated by 2 nucleotides Ac3H11_3956 and Ac3H11_3957 are separated by 88 nucleotides Ac3H11_3957 and Ac3H11_3958 are separated by 64 nucleotides
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Ac3H11_3956 - TRAP-type C4-dicarboxylate transport system, small permease component, at 181,032 to 181,550
_3956
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Ac3H11_3958 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 182,693 to 183,592
_3958
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.966 kb on - strand at 181.016 kb on - strand at 181.023 kb on + strand at 181.023 kb on + strand at 181.024 kb on - strand at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.514 kb on - strand at 181.550 kb on + strand at 181.550 kb on + strand at 181.551 kb on - strand at 181.551 kb on - strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.641 kb on - strand at 181.641 kb on - strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.677 kb on - strand at 181.718 kb on + strand at 181.718 kb on + strand at 181.719 kb on - strand at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 182.159 kb on + strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.160 kb on - strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.271 kb on + strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.272 kb on - strand, within Ac3H11_3957 at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.734 kb on - strand at 182.880 kb on + strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.881 kb on - strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.946 kb on + strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.947 kb on - strand, within Ac3H11_3958 at 182.960 kb on - strand, within Ac3H11_3958 at 183.042 kb on + strand, within Ac3H11_3958 at 183.084 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.207 kb on + strand, within Ac3H11_3958 at 183.216 kb on + strand, within Ac3H11_3958 at 183.217 kb on - strand, within Ac3H11_3958 at 183.414 kb on + strand, within Ac3H11_3958 at 183.415 kb on - strand, within Ac3H11_3958 at 183.539 kb on + strand at 183.539 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.595 kb on + strand at 183.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 180,966 - +0.7 181,016 - -1.7 181,023 + -0.5 181,023 + +0.6 181,024 - +0.6 181,150 + Ac3H11_3956 0.23 -0.0 181,150 + Ac3H11_3956 0.23 +0.2 181,150 + Ac3H11_3956 0.23 +0.9 181,150 + Ac3H11_3956 0.23 -0.4 181,151 - Ac3H11_3956 0.23 +0.7 181,151 - Ac3H11_3956 0.23 -0.8 181,151 - Ac3H11_3956 0.23 -0.1 181,151 - Ac3H11_3956 0.23 -0.7 181,514 - +1.4 181,550 + -1.3 181,550 + -0.6 181,551 - -0.7 181,551 - +1.1 181,640 + +0.7 181,640 + -2.2 181,640 + -1.1 181,640 + +0.9 181,640 + +0.3 181,640 + +0.3 181,641 - +0.1 181,641 - +0.4 181,676 + -1.0 181,676 + -1.0 181,676 + -0.1 181,677 - -1.0 181,718 + +1.1 181,718 + -0.5 181,719 - +0.6 181,778 + Ac3H11_3957 0.14 -0.2 181,778 + Ac3H11_3957 0.14 -1.2 181,778 + Ac3H11_3957 0.14 +1.2 181,934 + Ac3H11_3957 0.30 -0.2 181,934 + Ac3H11_3957 0.30 +0.3 182,159 + Ac3H11_3957 0.53 +0.9 182,160 - Ac3H11_3957 0.53 +0.2 182,160 - Ac3H11_3957 0.53 -1.5 182,271 + Ac3H11_3957 0.64 +0.4 182,271 + Ac3H11_3957 0.64 +1.8 182,271 + Ac3H11_3957 0.64 +0.7 182,271 + Ac3H11_3957 0.64 -0.6 182,271 + Ac3H11_3957 0.64 +0.4 182,271 + Ac3H11_3957 0.64 -1.8 182,272 - Ac3H11_3957 0.64 +0.6 182,272 - Ac3H11_3957 0.64 -0.1 182,272 - Ac3H11_3957 0.64 +1.1 182,272 - Ac3H11_3957 0.64 +0.1 182,734 - -3.2 182,734 - -0.6 182,734 - +0.3 182,734 - +0.1 182,880 + Ac3H11_3958 0.21 -1.3 182,881 - Ac3H11_3958 0.21 -0.0 182,881 - Ac3H11_3958 0.21 -1.5 182,881 - Ac3H11_3958 0.21 +0.2 182,881 - Ac3H11_3958 0.21 -1.1 182,881 - Ac3H11_3958 0.21 -0.5 182,946 + Ac3H11_3958 0.28 -0.2 182,946 + Ac3H11_3958 0.28 -1.0 182,946 + Ac3H11_3958 0.28 +0.5 182,947 - Ac3H11_3958 0.28 -1.0 182,947 - Ac3H11_3958 0.28 -0.8 182,947 - Ac3H11_3958 0.28 +0.6 182,960 - Ac3H11_3958 0.30 -1.5 183,042 + Ac3H11_3958 0.39 +0.4 183,084 + Ac3H11_3958 0.43 -2.3 183,207 + Ac3H11_3958 0.57 -0.2 183,207 + Ac3H11_3958 0.57 -2.8 183,207 + Ac3H11_3958 0.57 +0.2 183,207 + Ac3H11_3958 0.57 -1.2 183,216 + Ac3H11_3958 0.58 -0.2 183,217 - Ac3H11_3958 0.58 +0.4 183,414 + Ac3H11_3958 0.80 +0.5 183,415 - Ac3H11_3958 0.80 -1.2 183,539 + -0.3 183,539 + -2.2 183,595 + -0.6 183,595 + -0.7 183,595 + -1.1 183,596 - -1.8
Or see this region's nucleotide sequence