Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3954 and Ac3H11_3955 are separated by 6 nucleotides Ac3H11_3955 and Ac3H11_3956 are separated by 2 nucleotides Ac3H11_3956 and Ac3H11_3957 are separated by 88 nucleotides
Ac3H11_3954 - hypothetical protein, not 6-phosphogluconolactonase, at 178,708 to 179,739
_3954
Ac3H11_3955 - TRAP-type C4-dicarboxylate transport system, large permease component, at 179,746 to 181,029
_3955
Ac3H11_3956 - TRAP-type C4-dicarboxylate transport system, small permease component, at 181,032 to 181,550
_3956
Ac3H11_3957 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 181,639 to 182,628
_3957
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 178.899 kb on + strand, within Ac3H11_3954 at 178.900 kb on - strand, within Ac3H11_3954 at 178.985 kb on + strand, within Ac3H11_3954 at 178.986 kb on - strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.351 kb on + strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.352 kb on - strand, within Ac3H11_3954 at 179.579 kb on + strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.580 kb on - strand, within Ac3H11_3954 at 179.683 kb on + strand at 179.683 kb on + strand at 179.683 kb on + strand at 179.683 kb on + strand at 179.684 kb on - strand at 179.684 kb on - strand at 179.720 kb on - strand at 179.720 kb on - strand at 179.792 kb on + strand at 179.792 kb on + strand at 179.792 kb on + strand at 179.793 kb on - strand at 179.793 kb on - strand at 179.793 kb on - strand at 179.793 kb on - strand at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.089 kb on + strand, within Ac3H11_3955 at 180.158 kb on + strand, within Ac3H11_3955 at 180.159 kb on - strand, within Ac3H11_3955 at 180.251 kb on + strand, within Ac3H11_3955 at 180.261 kb on - strand, within Ac3H11_3955 at 180.558 kb on - strand, within Ac3H11_3955 at 180.966 kb on - strand at 181.016 kb on - strand at 181.023 kb on + strand at 181.023 kb on + strand at 181.024 kb on - strand at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.150 kb on + strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.151 kb on - strand, within Ac3H11_3956 at 181.514 kb on - strand at 181.550 kb on + strand at 181.550 kb on + strand at 181.551 kb on - strand at 181.551 kb on - strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.640 kb on + strand at 181.641 kb on - strand at 181.641 kb on - strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.676 kb on + strand at 181.677 kb on - strand at 181.718 kb on + strand at 181.718 kb on + strand at 181.719 kb on - strand at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.778 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957 at 181.934 kb on + strand, within Ac3H11_3957
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 178,899 + Ac3H11_3954 0.19 +0.8 178,900 - Ac3H11_3954 0.19 +0.0 178,985 + Ac3H11_3954 0.27 +0.6 178,986 - Ac3H11_3954 0.27 -0.3 179,351 + Ac3H11_3954 0.62 -0.3 179,351 + Ac3H11_3954 0.62 -1.0 179,352 - Ac3H11_3954 0.62 -0.2 179,352 - Ac3H11_3954 0.62 -0.6 179,352 - Ac3H11_3954 0.62 -1.3 179,352 - Ac3H11_3954 0.62 +1.1 179,579 + Ac3H11_3954 0.84 +0.6 179,580 - Ac3H11_3954 0.84 +0.5 179,580 - Ac3H11_3954 0.84 +0.1 179,683 + -0.0 179,683 + +0.3 179,683 + -0.7 179,683 + +1.5 179,684 - +1.2 179,684 - +0.2 179,720 - +3.0 179,720 - -0.5 179,792 + -2.1 179,792 + +0.3 179,792 + -1.9 179,793 - +1.0 179,793 - -0.1 179,793 - +0.5 179,793 - -0.8 180,089 + Ac3H11_3955 0.27 -0.6 180,089 + Ac3H11_3955 0.27 +0.2 180,089 + Ac3H11_3955 0.27 +0.6 180,089 + Ac3H11_3955 0.27 -0.5 180,089 + Ac3H11_3955 0.27 -0.8 180,158 + Ac3H11_3955 0.32 +0.6 180,159 - Ac3H11_3955 0.32 +1.8 180,251 + Ac3H11_3955 0.39 +0.1 180,261 - Ac3H11_3955 0.40 +0.6 180,558 - Ac3H11_3955 0.63 +0.3 180,966 - +0.7 181,016 - -1.7 181,023 + -0.5 181,023 + +0.6 181,024 - +0.6 181,150 + Ac3H11_3956 0.23 -0.0 181,150 + Ac3H11_3956 0.23 +0.2 181,150 + Ac3H11_3956 0.23 +0.9 181,150 + Ac3H11_3956 0.23 -0.4 181,151 - Ac3H11_3956 0.23 +0.7 181,151 - Ac3H11_3956 0.23 -0.8 181,151 - Ac3H11_3956 0.23 -0.1 181,151 - Ac3H11_3956 0.23 -0.7 181,514 - +1.4 181,550 + -1.3 181,550 + -0.6 181,551 - -0.7 181,551 - +1.1 181,640 + +0.7 181,640 + -2.2 181,640 + -1.1 181,640 + +0.9 181,640 + +0.3 181,640 + +0.3 181,641 - +0.1 181,641 - +0.4 181,676 + -1.0 181,676 + -1.0 181,676 + -0.1 181,677 - -1.0 181,718 + +1.1 181,718 + -0.5 181,719 - +0.6 181,778 + Ac3H11_3957 0.14 -0.2 181,778 + Ac3H11_3957 0.14 -1.2 181,778 + Ac3H11_3957 0.14 +1.2 181,934 + Ac3H11_3957 0.30 -0.2 181,934 + Ac3H11_3957 0.30 +0.3
Or see this region's nucleotide sequence