Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3941 and Ac3H11_3942 are separated by 39 nucleotides Ac3H11_3942 and Ac3H11_3943 are separated by 93 nucleotides Ac3H11_3943 and Ac3H11_3944 are separated by 0 nucleotides
Ac3H11_3941 - FIG01123212: hypothetical protein, at 159,265 to 164,895
_3941
Ac3H11_3942 - Putative DMT superfamily metabolite efflux protein precursor, at 164,935 to 165,843
_3942
Ac3H11_3943 - Transcriptional regulator, AsnC family, at 165,937 to 166,425
_3943
Ac3H11_3944 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 166,426 to 167,424
_3944
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1 at 164.209 kb on + strand, within Ac3H11_3941 at 164.330 kb on - strand, within Ac3H11_3941 at 164.764 kb on + strand at 165.338 kb on + strand, within Ac3H11_3942 at 165.338 kb on + strand, within Ac3H11_3942 at 165.339 kb on - strand, within Ac3H11_3942 at 165.339 kb on - strand, within Ac3H11_3942 at 165.339 kb on - strand, within Ac3H11_3942 at 165.372 kb on - strand, within Ac3H11_3942 at 165.372 kb on - strand, within Ac3H11_3942 at 165.372 kb on - strand, within Ac3H11_3942 at 165.560 kb on + strand, within Ac3H11_3942 at 165.560 kb on + strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.561 kb on - strand, within Ac3H11_3942 at 165.597 kb on - strand, within Ac3H11_3942 at 165.819 kb on + strand at 165.819 kb on + strand at 165.819 kb on + strand at 165.820 kb on - strand at 165.847 kb on + strand at 165.850 kb on - strand at 165.953 kb on + strand at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.240 kb on + strand, within Ac3H11_3943 at 166.241 kb on - strand, within Ac3H11_3943 at 166.241 kb on - strand, within Ac3H11_3943 at 166.301 kb on - strand, within Ac3H11_3943 at 166.427 kb on + strand at 166.427 kb on + strand at 166.428 kb on - strand at 166.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 164,209 + Ac3H11_3941 0.88 +0.1 164,330 - Ac3H11_3941 0.90 -2.4 164,764 + +0.0 165,338 + Ac3H11_3942 0.44 +1.6 165,338 + Ac3H11_3942 0.44 -1.0 165,339 - Ac3H11_3942 0.44 -1.0 165,339 - Ac3H11_3942 0.44 +1.4 165,339 - Ac3H11_3942 0.44 -2.0 165,372 - Ac3H11_3942 0.48 +0.8 165,372 - Ac3H11_3942 0.48 +1.4 165,372 - Ac3H11_3942 0.48 -0.1 165,560 + Ac3H11_3942 0.69 +0.6 165,560 + Ac3H11_3942 0.69 -0.0 165,561 - Ac3H11_3942 0.69 +1.0 165,561 - Ac3H11_3942 0.69 +0.2 165,561 - Ac3H11_3942 0.69 -0.7 165,561 - Ac3H11_3942 0.69 +0.2 165,597 - Ac3H11_3942 0.73 -0.9 165,819 + +0.1 165,819 + +0.3 165,819 + -1.2 165,820 - -0.0 165,847 + -0.8 165,850 - -0.1 165,953 + +0.3 166,240 + Ac3H11_3943 0.62 -0.5 166,240 + Ac3H11_3943 0.62 -0.0 166,240 + Ac3H11_3943 0.62 +0.8 166,240 + Ac3H11_3943 0.62 -0.9 166,240 + Ac3H11_3943 0.62 +0.3 166,241 - Ac3H11_3943 0.62 -0.1 166,241 - Ac3H11_3943 0.62 -1.0 166,301 - Ac3H11_3943 0.74 -0.0 166,427 + -0.5 166,427 + -2.0 166,428 - +0.2 166,428 - -1.0
Or see this region's nucleotide sequence