Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3613 and Ac3H11_3614 overlap by 4 nucleotides Ac3H11_3614 and Ac3H11_3615 are separated by 30 nucleotides Ac3H11_3615 and Ac3H11_3616 are separated by 100 nucleotides
Ac3H11_3613 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 165,739 to 166,749
_3613
Ac3H11_3614 - Permease of the drug/metabolite transporter (DMT) superfamily, at 166,746 to 167,663
_3614
Ac3H11_3615 - Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1), at 167,694 to 168,323
_3615
Ac3H11_3616 - Putative threonine efflux protein, at 168,424 to 169,065
_3616
Position (kb) 166
167
168 Strain fitness (log2 ratio) -2
-1
0
1 at 165.901 kb on + strand, within Ac3H11_3613 at 165.902 kb on - strand, within Ac3H11_3613 at 166.024 kb on + strand, within Ac3H11_3613 at 166.189 kb on + strand, within Ac3H11_3613 at 166.953 kb on + strand, within Ac3H11_3614 at 166.953 kb on + strand, within Ac3H11_3614 at 167.277 kb on + strand, within Ac3H11_3614 at 167.278 kb on - strand, within Ac3H11_3614 at 167.419 kb on - strand, within Ac3H11_3614 at 167.440 kb on + strand, within Ac3H11_3614 at 167.448 kb on + strand, within Ac3H11_3614 at 167.542 kb on - strand, within Ac3H11_3614 at 167.661 kb on + strand at 167.720 kb on - strand at 167.919 kb on + strand, within Ac3H11_3615 at 167.919 kb on + strand, within Ac3H11_3615 at 168.087 kb on + strand, within Ac3H11_3615 at 168.087 kb on + strand, within Ac3H11_3615 at 168.088 kb on - strand, within Ac3H11_3615 at 168.374 kb on + strand at 168.375 kb on - strand at 168.418 kb on + strand at 168.418 kb on + strand at 168.419 kb on - strand at 168.419 kb on - strand at 168.437 kb on + strand at 168.437 kb on + strand at 168.438 kb on - strand at 168.630 kb on + strand, within Ac3H11_3616 at 168.631 kb on - strand, within Ac3H11_3616 at 168.658 kb on + strand, within Ac3H11_3616
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 165,901 + Ac3H11_3613 0.16 -0.7 165,902 - Ac3H11_3613 0.16 -2.1 166,024 + Ac3H11_3613 0.28 -1.2 166,189 + Ac3H11_3613 0.45 -0.2 166,953 + Ac3H11_3614 0.23 +0.3 166,953 + Ac3H11_3614 0.23 +0.8 167,277 + Ac3H11_3614 0.58 -1.2 167,278 - Ac3H11_3614 0.58 -0.0 167,419 - Ac3H11_3614 0.73 -0.2 167,440 + Ac3H11_3614 0.76 +1.2 167,448 + Ac3H11_3614 0.76 -1.7 167,542 - Ac3H11_3614 0.87 +0.5 167,661 + -0.4 167,720 - -2.2 167,919 + Ac3H11_3615 0.36 +0.6 167,919 + Ac3H11_3615 0.36 -0.1 168,087 + Ac3H11_3615 0.62 -1.0 168,087 + Ac3H11_3615 0.62 -0.8 168,088 - Ac3H11_3615 0.63 +1.3 168,374 + -0.3 168,375 - +0.4 168,418 + -0.1 168,418 + +0.3 168,419 - -0.4 168,419 - -0.9 168,437 + -0.3 168,437 + +0.1 168,438 - +0.3 168,630 + Ac3H11_3616 0.32 -0.2 168,631 - Ac3H11_3616 0.32 -0.3 168,658 + Ac3H11_3616 0.36 -0.1
Or see this region's nucleotide sequence