Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3515 and Ac3H11_3516 are separated by 28 nucleotides Ac3H11_3516 and Ac3H11_3517 are separated by 265 nucleotides Ac3H11_3517 and Ac3H11_3518 are separated by 110 nucleotides Ac3H11_3518 and Ac3H11_3519 overlap by 17 nucleotides Ac3H11_3519 and Ac3H11_3520 overlap by 16 nucleotides
Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292
_3515
Ac3H11_3516 - hypothetical protein, at 62,321 to 62,725
_3516
Ac3H11_3517 - Transcriptional regulator, LysR family, at 62,991 to 63,893
_3517
Ac3H11_3518 - Rrf2-linked NADH-flavin reductase, at 64,004 to 64,645
_3518
Ac3H11_3519 - hypothetical protein, at 64,629 to 64,796
_3519
Ac3H11_3520 - TRAP-type C4-dicarboxylate transport system, large permease component, at 64,781 to 66,061
_3520
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 62.093 kb on + strand, within Ac3H11_3515 at 62.094 kb on - strand, within Ac3H11_3515 at 62.094 kb on - strand, within Ac3H11_3515 at 62.250 kb on - strand at 62.265 kb on - strand at 62.265 kb on - strand at 62.358 kb on + strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.359 kb on - strand at 62.423 kb on + strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.424 kb on - strand, within Ac3H11_3516 at 62.430 kb on + strand, within Ac3H11_3516 at 62.717 kb on - strand at 62.756 kb on + strand at 62.757 kb on - strand at 62.757 kb on - strand at 62.795 kb on + strand at 62.795 kb on + strand at 62.796 kb on - strand at 62.796 kb on - strand at 62.796 kb on - strand at 63.023 kb on - strand at 63.023 kb on - strand at 63.023 kb on - strand at 63.406 kb on + strand, within Ac3H11_3517 at 63.406 kb on + strand, within Ac3H11_3517 at 63.407 kb on - strand, within Ac3H11_3517 at 63.407 kb on - strand, within Ac3H11_3517 at 63.407 kb on - strand, within Ac3H11_3517 at 63.899 kb on - strand at 63.943 kb on - strand at 63.965 kb on + strand at 63.977 kb on - strand at 64.211 kb on + strand, within Ac3H11_3518 at 64.211 kb on + strand, within Ac3H11_3518 at 64.212 kb on - strand, within Ac3H11_3518 at 64.212 kb on - strand, within Ac3H11_3518 at 64.212 kb on - strand, within Ac3H11_3518 at 64.698 kb on + strand, within Ac3H11_3519 at 64.717 kb on - strand, within Ac3H11_3519 at 64.717 kb on - strand, within Ac3H11_3519
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 62,093 + Ac3H11_3515 0.77 +0.5 62,094 - Ac3H11_3515 0.77 -1.0 62,094 - Ac3H11_3515 0.77 +1.4 62,250 - +0.4 62,265 - +0.7 62,265 - -2.6 62,358 + -3.2 62,359 - -0.2 62,359 - +0.2 62,359 - -1.4 62,359 - +0.6 62,359 - -0.4 62,423 + Ac3H11_3516 0.25 -0.7 62,424 - Ac3H11_3516 0.25 +1.4 62,424 - Ac3H11_3516 0.25 -0.1 62,424 - Ac3H11_3516 0.25 -1.7 62,424 - Ac3H11_3516 0.25 +0.0 62,430 + Ac3H11_3516 0.27 +0.3 62,717 - -0.3 62,756 + -0.4 62,757 - +0.3 62,757 - -0.5 62,795 + -0.0 62,795 + -1.6 62,796 - -0.5 62,796 - +0.3 62,796 - -0.5 63,023 - -0.1 63,023 - +0.7 63,023 - -0.0 63,406 + Ac3H11_3517 0.46 -2.7 63,406 + Ac3H11_3517 0.46 -0.2 63,407 - Ac3H11_3517 0.46 +1.0 63,407 - Ac3H11_3517 0.46 -0.9 63,407 - Ac3H11_3517 0.46 -1.2 63,899 - -0.2 63,943 - -0.5 63,965 + +1.0 63,977 - +1.1 64,211 + Ac3H11_3518 0.32 -0.7 64,211 + Ac3H11_3518 0.32 -2.8 64,212 - Ac3H11_3518 0.32 +0.5 64,212 - Ac3H11_3518 0.32 -2.4 64,212 - Ac3H11_3518 0.32 -1.2 64,698 + Ac3H11_3519 0.41 -0.0 64,717 - Ac3H11_3519 0.52 -0.8 64,717 - Ac3H11_3519 0.52 -0.2
Or see this region's nucleotide sequence