Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3516

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3514 and Ac3H11_3515 are separated by 44 nucleotidesAc3H11_3515 and Ac3H11_3516 are separated by 28 nucleotidesAc3H11_3516 and Ac3H11_3517 are separated by 265 nucleotides Ac3H11_3514 - Antibiotic biosynthesis monooxygenase, at 61,067 to 61,369 _3514 Ac3H11_3515 - putative transcriptional regulator, LysR family, at 61,414 to 62,292 _3515 Ac3H11_3516 - hypothetical protein, at 62,321 to 62,725 _3516 Ac3H11_3517 - Transcriptional regulator, LysR family, at 62,991 to 63,893 _3517 Position (kb) 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1at 61.832 kb on + strand, within Ac3H11_3515at 61.832 kb on + strand, within Ac3H11_3515at 61.832 kb on + strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 61.833 kb on - strand, within Ac3H11_3515at 62.093 kb on + strand, within Ac3H11_3515at 62.094 kb on - strand, within Ac3H11_3515at 62.094 kb on - strand, within Ac3H11_3515at 62.250 kb on - strandat 62.265 kb on - strandat 62.265 kb on - strandat 62.358 kb on + strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.359 kb on - strandat 62.423 kb on + strand, within Ac3H11_3516at 62.424 kb on - strand, within Ac3H11_3516at 62.424 kb on - strand, within Ac3H11_3516at 62.424 kb on - strand, within Ac3H11_3516at 62.424 kb on - strand, within Ac3H11_3516at 62.430 kb on + strand, within Ac3H11_3516at 62.717 kb on - strandat 62.756 kb on + strandat 62.757 kb on - strandat 62.757 kb on - strandat 62.795 kb on + strandat 62.795 kb on + strandat 62.796 kb on - strandat 62.796 kb on - strandat 62.796 kb on - strandat 63.023 kb on - strandat 63.023 kb on - strandat 63.023 kb on - strandat 63.406 kb on + strand, within Ac3H11_3517at 63.406 kb on + strand, within Ac3H11_3517at 63.407 kb on - strand, within Ac3H11_3517at 63.407 kb on - strand, within Ac3H11_3517at 63.407 kb on - strand, within Ac3H11_3517

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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61,832 + Ac3H11_3515 0.48 +0.1
61,832 + Ac3H11_3515 0.48 -1.3
61,832 + Ac3H11_3515 0.48 +0.1
61,833 - Ac3H11_3515 0.48 +0.1
61,833 - Ac3H11_3515 0.48 +0.5
61,833 - Ac3H11_3515 0.48 -0.0
61,833 - Ac3H11_3515 0.48 +0.3
62,093 + Ac3H11_3515 0.77 +0.5
62,094 - Ac3H11_3515 0.77 -1.0
62,094 - Ac3H11_3515 0.77 +1.4
62,250 - +0.4
62,265 - +0.7
62,265 - -2.6
62,358 + -3.2
62,359 - -0.2
62,359 - +0.2
62,359 - -1.4
62,359 - +0.6
62,359 - -0.4
62,423 + Ac3H11_3516 0.25 -0.7
62,424 - Ac3H11_3516 0.25 +1.4
62,424 - Ac3H11_3516 0.25 -0.1
62,424 - Ac3H11_3516 0.25 -1.7
62,424 - Ac3H11_3516 0.25 +0.0
62,430 + Ac3H11_3516 0.27 +0.3
62,717 - -0.3
62,756 + -0.4
62,757 - +0.3
62,757 - -0.5
62,795 + -0.0
62,795 + -1.6
62,796 - -0.5
62,796 - +0.3
62,796 - -0.5
63,023 - -0.1
63,023 - +0.7
63,023 - -0.0
63,406 + Ac3H11_3517 0.46 -2.7
63,406 + Ac3H11_3517 0.46 -0.2
63,407 - Ac3H11_3517 0.46 +1.0
63,407 - Ac3H11_3517 0.46 -0.9
63,407 - Ac3H11_3517 0.46 -1.2

Or see this region's nucleotide sequence