Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_347 and Ac3H11_348 are separated by 28 nucleotides Ac3H11_348 and Ac3H11_349 overlap by 1 nucleotides Ac3H11_349 and Ac3H11_350 are separated by 59 nucleotides Ac3H11_350 and Ac3H11_351 are separated by 34 nucleotides Ac3H11_351 and Ac3H11_352 are separated by 3 nucleotides Ac3H11_352 and Ac3H11_353 are separated by 13 nucleotides
Ac3H11_347 - probable phage replication protein NMA0782, at 23,211 to 24,197
_347
Ac3H11_348 - hypothetical protein, at 24,226 to 24,549
_348
Ac3H11_349 - hypothetical protein, at 24,549 to 24,758
_349
Ac3H11_350 - hypothetical protein, at 24,818 to 25,024
_350
Ac3H11_351 - hypothetical protein, at 25,059 to 25,223
_351
Ac3H11_352 - hypothetical protein, at 25,227 to 25,445
_352
Ac3H11_353 - PE-PGRS FAMILY PROTEIN, at 25,459 to 27,096
_353
Position (kb) 24
25 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 23.613 kb on + strand, within Ac3H11_347 at 23.739 kb on + strand, within Ac3H11_347 at 23.739 kb on + strand, within Ac3H11_347 at 23.740 kb on - strand at 23.827 kb on + strand, within Ac3H11_347 at 23.828 kb on - strand, within Ac3H11_347 at 23.828 kb on - strand, within Ac3H11_347 at 23.828 kb on - strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.842 kb on + strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.843 kb on - strand, within Ac3H11_347 at 23.983 kb on + strand, within Ac3H11_347 at 23.984 kb on - strand, within Ac3H11_347 at 23.984 kb on - strand, within Ac3H11_347 at 23.984 kb on - strand, within Ac3H11_347 at 24.127 kb on + strand at 24.165 kb on - strand at 24.195 kb on + strand at 24.195 kb on + strand at 24.196 kb on - strand at 24.196 kb on - strand at 24.278 kb on + strand, within Ac3H11_348 at 24.354 kb on + strand, within Ac3H11_348 at 24.354 kb on + strand, within Ac3H11_348 at 24.354 kb on + strand, within Ac3H11_348 at 24.555 kb on + strand at 24.556 kb on - strand at 24.601 kb on - strand, within Ac3H11_349 at 24.601 kb on - strand, within Ac3H11_349 at 24.791 kb on - strand at 24.800 kb on + strand at 24.800 kb on + strand at 24.801 kb on - strand at 24.801 kb on - strand at 25.188 kb on - strand at 25.188 kb on - strand, within Ac3H11_351 at 25.443 kb on + strand at 25.536 kb on + strand at 25.536 kb on + strand at 25.536 kb on + strand at 25.536 kb on + strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.537 kb on - strand at 25.601 kb on + strand at 25.602 kb on - strand at 25.602 kb on - strand at 25.602 kb on - strand at 25.724 kb on + strand, within Ac3H11_353 at 25.725 kb on - strand, within Ac3H11_353 at 25.725 kb on - strand, within Ac3H11_353
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 23,613 + Ac3H11_347 0.41 +0.2 23,739 + Ac3H11_347 0.53 +0.7 23,739 + Ac3H11_347 0.53 +0.4 23,740 - +1.7 23,827 + Ac3H11_347 0.62 -0.3 23,828 - Ac3H11_347 0.63 -0.1 23,828 - Ac3H11_347 0.63 +0.5 23,828 - Ac3H11_347 0.63 +3.1 23,842 + Ac3H11_347 0.64 -0.6 23,842 + Ac3H11_347 0.64 -0.2 23,842 + Ac3H11_347 0.64 -1.1 23,842 + Ac3H11_347 0.64 +0.5 23,842 + Ac3H11_347 0.64 -1.3 23,842 + Ac3H11_347 0.64 -0.7 23,842 + Ac3H11_347 0.64 -0.1 23,842 + Ac3H11_347 0.64 +0.5 23,842 + Ac3H11_347 0.64 +0.1 23,843 - Ac3H11_347 0.64 -0.3 23,843 - Ac3H11_347 0.64 -0.1 23,843 - Ac3H11_347 0.64 +0.2 23,843 - Ac3H11_347 0.64 -0.8 23,843 - Ac3H11_347 0.64 -2.1 23,843 - Ac3H11_347 0.64 -2.0 23,843 - Ac3H11_347 0.64 -1.3 23,843 - Ac3H11_347 0.64 -1.5 23,983 + Ac3H11_347 0.78 +0.4 23,984 - Ac3H11_347 0.78 -0.6 23,984 - Ac3H11_347 0.78 +0.4 23,984 - Ac3H11_347 0.78 -0.9 24,127 + +0.3 24,165 - +0.1 24,195 + -1.1 24,195 + -2.1 24,196 - +1.2 24,196 - +0.9 24,278 + Ac3H11_348 0.16 -0.1 24,354 + Ac3H11_348 0.40 -1.2 24,354 + Ac3H11_348 0.40 -1.9 24,354 + Ac3H11_348 0.40 +0.5 24,555 + -0.3 24,556 - +0.3 24,601 - Ac3H11_349 0.25 +0.4 24,601 - Ac3H11_349 0.25 +1.4 24,791 - +0.9 24,800 + -1.2 24,800 + +0.6 24,801 - +1.1 24,801 - +0.5 25,188 - -0.9 25,188 - Ac3H11_351 0.78 -0.0 25,443 + +0.9 25,536 + -1.5 25,536 + +0.4 25,536 + -1.0 25,536 + +1.1 25,537 - +1.0 25,537 - -0.3 25,537 - +0.8 25,537 - -0.1 25,537 - +0.6 25,601 + +0.4 25,602 - +1.0 25,602 - +0.9 25,602 - -0.5 25,724 + Ac3H11_353 0.16 -2.3 25,725 - Ac3H11_353 0.16 +0.3 25,725 - Ac3H11_353 0.16 +0.4
Or see this region's nucleotide sequence