Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2840

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2838 and Ac3H11_2839 are separated by 218 nucleotidesAc3H11_2839 and Ac3H11_2840 are separated by 98 nucleotidesAc3H11_2840 and Ac3H11_2841 are separated by 41 nucleotidesAc3H11_2841 and Ac3H11_2842 are separated by 3 nucleotides Ac3H11_2838 - L-lactate dehydrogenase (EC 1.1.2.3), at 1,145,543 to 1,146,688 _2838 Ac3H11_2839 - FOG: HEAT repeat, at 1,146,907 to 1,147,116 _2839 Ac3H11_2840 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,147,215 to 1,147,901 _2840 Ac3H11_2841 - MotA/TolQ/ExbB proton channel family protein, at 1,147,943 to 1,148,662 _2841 Ac3H11_2842 - Biopolymer transport protein ExbD/TolR, at 1,148,666 to 1,149,073 _2842 Position (kb) 1147 1148Strain fitness (log2 ratio) -2 -1 0 1 2at 1146.799 kb on + strandat 1147.156 kb on - strandat 1147.169 kb on + strandat 1147.187 kb on + strandat 1147.214 kb on + strandat 1147.214 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.660 kb on + strandat 1148.661 kb on - strandat 1148.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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1,146,799 + -1.1
1,147,156 - +1.0
1,147,169 + -0.8
1,147,187 + +0.5
1,147,214 + +1.8
1,147,214 + -0.7
1,148,660 + +0.7
1,148,660 + +0.3
1,148,660 + +0.2
1,148,660 + -1.1
1,148,660 + -0.1
1,148,660 + +0.3
1,148,660 + +0.9
1,148,660 + +0.3
1,148,660 + +0.3
1,148,661 - -1.5
1,148,661 - -2.2

Or see this region's nucleotide sequence