Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_271

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_269 and Ac3H11_270 are separated by 54 nucleotidesAc3H11_270 and Ac3H11_271 overlap by 32 nucleotidesAc3H11_271 and Ac3H11_272 are separated by 10 nucleotidesAc3H11_272 and Ac3H11_273 are separated by 32 nucleotides Ac3H11_269 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 92,089 to 93,855 _269 Ac3H11_270 - hypothetical protein, at 93,910 to 94,155 _270 Ac3H11_271 - Topoisomerase IV subunit A (EC 5.99.1.-), at 94,124 to 96,481 _271 Ac3H11_272 - Lytic transglycosylase, catalytic, at 96,492 to 97,355 _272 Ac3H11_273 - Topoisomerase IV subunit B (EC 5.99.1.-), at 97,388 to 99,424 _273 Position (kb) 94 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 93.233 kb on + strand, within Ac3H11_269at 93.233 kb on + strand, within Ac3H11_269at 93.233 kb on + strand, within Ac3H11_269at 93.234 kb on - strand, within Ac3H11_269at 93.234 kb on - strand, within Ac3H11_269at 93.234 kb on - strand, within Ac3H11_269at 93.234 kb on - strandat 93.234 kb on - strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.236 kb on + strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.237 kb on - strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.383 kb on + strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.384 kb on - strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.404 kb on + strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.405 kb on - strand, within Ac3H11_269at 93.804 kb on + strandat 93.805 kb on - strandat 93.805 kb on - strandat 93.805 kb on - strandat 94.014 kb on + strand, within Ac3H11_270at 94.014 kb on + strand, within Ac3H11_270at 94.014 kb on + strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.015 kb on - strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.018 kb on + strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.019 kb on - strand, within Ac3H11_270at 94.126 kb on - strandat 94.126 kb on - strandat 96.670 kb on + strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.671 kb on - strand, within Ac3H11_272at 96.694 kb on + strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.695 kb on - strand, within Ac3H11_272at 96.763 kb on + strand, within Ac3H11_272at 96.764 kb on - strand, within Ac3H11_272at 96.764 kb on - strand, within Ac3H11_272at 96.820 kb on + strand, within Ac3H11_272at 96.821 kb on - strand, within Ac3H11_272at 96.821 kb on - strand, within Ac3H11_272at 97.013 kb on - strand, within Ac3H11_272at 97.013 kb on - strand, within Ac3H11_272at 97.013 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.067 kb on - strand, within Ac3H11_272at 97.124 kb on - strand, within Ac3H11_272at 97.124 kb on - strand, within Ac3H11_272at 97.196 kb on - strand, within Ac3H11_272at 97.389 kb on + strandat 97.389 kb on + strandat 97.389 kb on + strandat 97.389 kb on + strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strandat 97.390 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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93,233 + Ac3H11_269 0.65 +0.1
93,233 + Ac3H11_269 0.65 -0.3
93,233 + Ac3H11_269 0.65 +0.1
93,234 - Ac3H11_269 0.65 +0.9
93,234 - Ac3H11_269 0.65 +1.6
93,234 - Ac3H11_269 0.65 -0.1
93,234 - +1.7
93,234 - Ac3H11_269 0.65 -0.4
93,236 + Ac3H11_269 0.65 +1.0
93,236 + Ac3H11_269 0.65 -0.1
93,236 + Ac3H11_269 0.65 +1.2
93,236 + Ac3H11_269 0.65 -1.1
93,236 + Ac3H11_269 0.65 -0.4
93,236 + Ac3H11_269 0.65 -0.3
93,236 + Ac3H11_269 0.65 -0.5
93,236 + Ac3H11_269 0.65 -0.9
93,236 + Ac3H11_269 0.65 -2.0
93,236 + Ac3H11_269 0.65 +0.5
93,237 - Ac3H11_269 0.65 +0.0
93,237 - Ac3H11_269 0.65 +1.6
93,237 - Ac3H11_269 0.65 -0.1
93,237 - Ac3H11_269 0.65 +0.4
93,237 - Ac3H11_269 0.65 -0.4
93,237 - Ac3H11_269 0.65 -0.3
93,237 - Ac3H11_269 0.65 -0.1
93,237 - Ac3H11_269 0.65 +0.3
93,237 - Ac3H11_269 0.65 +0.7
93,237 - Ac3H11_269 0.65 -0.0
93,383 + Ac3H11_269 0.73 +0.3
93,383 + Ac3H11_269 0.73 -0.1
93,383 + Ac3H11_269 0.73 +1.6
93,383 + Ac3H11_269 0.73 -0.9
93,383 + Ac3H11_269 0.73 +0.8
93,383 + Ac3H11_269 0.73 +0.2
93,383 + Ac3H11_269 0.73 +0.5
93,383 + Ac3H11_269 0.73 +0.5
93,384 - Ac3H11_269 0.73 +0.7
93,384 - Ac3H11_269 0.73 +1.2
93,384 - Ac3H11_269 0.73 +0.5
93,384 - Ac3H11_269 0.73 -1.9
93,384 - Ac3H11_269 0.73 -0.5
93,384 - Ac3H11_269 0.73 -0.0
93,384 - Ac3H11_269 0.73 -2.3
93,404 + Ac3H11_269 0.74 +0.1
93,404 + Ac3H11_269 0.74 -1.2
93,404 + Ac3H11_269 0.74 +0.7
93,404 + Ac3H11_269 0.74 -1.1
93,404 + Ac3H11_269 0.74 -0.5
93,404 + Ac3H11_269 0.74 -0.4
93,404 + Ac3H11_269 0.74 -0.3
93,404 + Ac3H11_269 0.74 -0.5
93,405 - Ac3H11_269 0.74 +0.3
93,405 - Ac3H11_269 0.74 -1.0
93,405 - Ac3H11_269 0.74 +0.6
93,405 - Ac3H11_269 0.74 -0.1
93,405 - Ac3H11_269 0.74 +0.8
93,405 - Ac3H11_269 0.74 -0.1
93,405 - Ac3H11_269 0.74 -0.0
93,405 - Ac3H11_269 0.74 -1.3
93,405 - Ac3H11_269 0.74 +1.0
93,405 - Ac3H11_269 0.74 -0.4
93,405 - Ac3H11_269 0.74 -0.3
93,405 - Ac3H11_269 0.74 +0.6
93,405 - Ac3H11_269 0.74 -0.1
93,405 - Ac3H11_269 0.74 +0.1
93,405 - Ac3H11_269 0.74 +0.5
93,804 + -1.0
93,805 - -0.0
93,805 - -0.7
93,805 - +1.7
94,014 + Ac3H11_270 0.42 -0.5
94,014 + Ac3H11_270 0.42 -1.6
94,014 + Ac3H11_270 0.42 -0.3
94,015 - Ac3H11_270 0.43 -0.5
94,015 - Ac3H11_270 0.43 -1.2
94,015 - Ac3H11_270 0.43 +0.8
94,015 - Ac3H11_270 0.43 -1.4
94,018 + Ac3H11_270 0.44 +0.3
94,018 + Ac3H11_270 0.44 +0.1
94,018 + Ac3H11_270 0.44 +0.3
94,018 + Ac3H11_270 0.44 +1.5
94,018 + Ac3H11_270 0.44 +0.6
94,018 + Ac3H11_270 0.44 +0.2
94,019 - Ac3H11_270 0.44 -0.3
94,019 - Ac3H11_270 0.44 -0.4
94,019 - Ac3H11_270 0.44 +0.0
94,019 - Ac3H11_270 0.44 +0.4
94,019 - Ac3H11_270 0.44 +0.8
94,019 - Ac3H11_270 0.44 +2.1
94,019 - Ac3H11_270 0.44 -0.7
94,019 - Ac3H11_270 0.44 -0.2
94,019 - Ac3H11_270 0.44 -0.2
94,019 - Ac3H11_270 0.44 -0.7
94,126 - +0.2
94,126 - -0.1
96,670 + Ac3H11_272 0.21 -1.8
96,671 - Ac3H11_272 0.21 -0.2
96,671 - Ac3H11_272 0.21 -2.4
96,671 - Ac3H11_272 0.21 +1.7
96,671 - Ac3H11_272 0.21 -0.1
96,671 - Ac3H11_272 0.21 +0.7
96,694 + Ac3H11_272 0.23 +0.0
96,695 - Ac3H11_272 0.23 +1.4
96,695 - Ac3H11_272 0.23 +0.1
96,695 - Ac3H11_272 0.23 +0.5
96,695 - Ac3H11_272 0.23 +0.6
96,695 - Ac3H11_272 0.23 -2.7
96,695 - Ac3H11_272 0.23 +0.9
96,695 - Ac3H11_272 0.23 +0.5
96,763 + Ac3H11_272 0.31 -1.1
96,764 - Ac3H11_272 0.31 +0.4
96,764 - Ac3H11_272 0.31 -0.7
96,820 + Ac3H11_272 0.38 -2.8
96,821 - Ac3H11_272 0.38 -0.0
96,821 - Ac3H11_272 0.38 -0.5
97,013 - Ac3H11_272 0.60 -1.1
97,013 - Ac3H11_272 0.60 -0.1
97,013 - Ac3H11_272 0.60 -2.4
97,067 - Ac3H11_272 0.67 +0.3
97,067 - Ac3H11_272 0.67 -0.1
97,067 - Ac3H11_272 0.67 -1.0
97,067 - Ac3H11_272 0.67 -0.9
97,124 - Ac3H11_272 0.73 +0.1
97,124 - Ac3H11_272 0.73 -0.4
97,196 - Ac3H11_272 0.81 -0.5
97,389 + -2.9
97,389 + +0.0
97,389 + +0.7
97,389 + -1.1
97,390 - +0.8
97,390 - -0.4
97,390 - -0.4
97,390 - -0.3
97,390 - -0.8
97,390 - +0.0

Or see this region's nucleotide sequence