Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2700

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2699 and Ac3H11_2700 are separated by 15 nucleotidesAc3H11_2700 and Ac3H11_2701 are separated by 481 nucleotides Ac3H11_2699 - Transcriptional regulator, MarR family, at 994,908 to 996,443 _2699 Ac3H11_2700 - FIG00575888: hypothetical protein, at 996,459 to 997,400 _2700 Ac3H11_2701 - FIG002188: hypothetical protein, at 997,882 to 998,817 _2701 Position (kb) 996 997 998Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.485 kb on - strand, within Ac3H11_2699at 995.485 kb on - strand, within Ac3H11_2699at 995.958 kb on + strand, within Ac3H11_2699at 996.273 kb on - strand, within Ac3H11_2699at 996.273 kb on - strand, within Ac3H11_2699at 996.276 kb on - strand, within Ac3H11_2699at 996.276 kb on - strand, within Ac3H11_2699at 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.440 kb on - strandat 996.440 kb on - strandat 996.440 kb on - strandat 996.440 kb on - strandat 996.527 kb on + strandat 996.528 kb on - strandat 996.583 kb on + strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.603 kb on - strand, within Ac3H11_2700at 996.632 kb on + strand, within Ac3H11_2700at 996.633 kb on - strand, within Ac3H11_2700at 996.872 kb on - strand, within Ac3H11_2700at 996.960 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.015 kb on + strand, within Ac3H11_2700at 997.312 kb on + strandat 997.313 kb on - strandat 997.327 kb on - strandat 997.509 kb on + strandat 997.510 kb on - strandat 997.637 kb on + strandat 997.637 kb on + strandat 997.637 kb on + strandat 997.637 kb on + strandat 997.637 kb on + strandat 997.637 kb on + strandat 997.638 kb on - strandat 997.638 kb on - strandat 997.680 kb on + strandat 997.680 kb on + strandat 997.861 kb on + strandat 997.861 kb on + strandat 997.862 kb on - strandat 997.878 kb on + strandat 997.878 kb on + strandat 997.878 kb on + strandat 997.879 kb on - strandat 997.883 kb on + strandat 997.883 kb on + strandat 997.884 kb on - strandat 997.907 kb on - strandat 997.992 kb on - strand, within Ac3H11_2701at 998.013 kb on - strand, within Ac3H11_2701at 998.013 kb on - strand, within Ac3H11_2701at 998.052 kb on - strand, within Ac3H11_2701at 998.052 kb on - strand, within Ac3H11_2701at 998.052 kb on - strand, within Ac3H11_2701at 998.150 kb on + strand, within Ac3H11_2701at 998.150 kb on + strand, within Ac3H11_2701at 998.165 kb on + strand, within Ac3H11_2701at 998.165 kb on + strand, within Ac3H11_2701at 998.288 kb on + strand, within Ac3H11_2701at 998.289 kb on - strand, within Ac3H11_2701at 998.289 kb on - strand, within Ac3H11_2701at 998.300 kb on + strand, within Ac3H11_2701at 998.301 kb on - strand, within Ac3H11_2701at 998.309 kb on + strand, within Ac3H11_2701at 998.390 kb on + strand, within Ac3H11_2701at 998.390 kb on + strand, within Ac3H11_2701at 998.391 kb on - strand, within Ac3H11_2701

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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995,484 + Ac3H11_2699 0.38 +0.7
995,484 + Ac3H11_2699 0.38 -2.2
995,484 + Ac3H11_2699 0.38 -0.7
995,484 + Ac3H11_2699 0.38 -0.1
995,484 + Ac3H11_2699 0.38 -0.4
995,485 - Ac3H11_2699 0.38 +0.2
995,485 - Ac3H11_2699 0.38 +0.0
995,958 + Ac3H11_2699 0.68 -0.4
996,273 - Ac3H11_2699 0.89 +0.1
996,273 - Ac3H11_2699 0.89 -0.0
996,276 - Ac3H11_2699 0.89 -1.7
996,276 - Ac3H11_2699 0.89 +0.7
996,439 + -1.2
996,439 + +0.2
996,439 + -1.0
996,439 + +0.1
996,439 + -0.4
996,439 + -0.4
996,439 + +0.3
996,439 + +0.8
996,439 + -1.1
996,439 + +0.9
996,439 + +1.0
996,439 + -0.2
996,440 - -0.2
996,440 - +0.0
996,440 - -1.1
996,440 - +0.4
996,527 + -0.2
996,528 - -0.1
996,583 + Ac3H11_2700 0.13 -0.1
996,584 - Ac3H11_2700 0.13 +0.1
996,584 - Ac3H11_2700 0.13 +1.1
996,584 - Ac3H11_2700 0.13 +0.5
996,584 - Ac3H11_2700 0.13 +1.0
996,603 - Ac3H11_2700 0.15 +0.1
996,632 + Ac3H11_2700 0.18 -0.5
996,633 - Ac3H11_2700 0.18 +2.5
996,872 - Ac3H11_2700 0.44 +0.3
996,960 + Ac3H11_2700 0.53 -0.8
997,012 + Ac3H11_2700 0.59 -0.1
997,012 + Ac3H11_2700 0.59 +1.2
997,012 + Ac3H11_2700 0.59 -1.9
997,012 + Ac3H11_2700 0.59 +0.5
997,013 - Ac3H11_2700 0.59 -1.2
997,013 - Ac3H11_2700 0.59 -0.5
997,013 - Ac3H11_2700 0.59 +0.5
997,013 - Ac3H11_2700 0.59 +0.7
997,015 + Ac3H11_2700 0.59 -0.6
997,312 + +0.6
997,313 - +0.2
997,327 - +0.3
997,509 + +0.8
997,510 - -3.4
997,637 + +0.6
997,637 + -0.8
997,637 + -0.8
997,637 + +0.5
997,637 + -0.8
997,637 + +0.5
997,638 - +0.7
997,638 - +0.2
997,680 + +0.7
997,680 + +0.9
997,861 + +0.3
997,861 + -2.0
997,862 - +0.0
997,878 + +0.4
997,878 + +0.1
997,878 + -0.5
997,879 - -0.5
997,883 + +0.4
997,883 + -0.4
997,884 - -0.1
997,907 - -0.3
997,992 - Ac3H11_2701 0.12 +0.6
998,013 - Ac3H11_2701 0.14 +0.3
998,013 - Ac3H11_2701 0.14 +0.8
998,052 - Ac3H11_2701 0.18 +0.9
998,052 - Ac3H11_2701 0.18 +1.4
998,052 - Ac3H11_2701 0.18 -0.0
998,150 + Ac3H11_2701 0.29 +0.7
998,150 + Ac3H11_2701 0.29 -0.2
998,165 + Ac3H11_2701 0.30 -1.6
998,165 + Ac3H11_2701 0.30 +2.4
998,288 + Ac3H11_2701 0.43 -0.0
998,289 - Ac3H11_2701 0.43 +1.2
998,289 - Ac3H11_2701 0.43 -0.7
998,300 + Ac3H11_2701 0.45 -0.1
998,301 - Ac3H11_2701 0.45 +1.0
998,309 + Ac3H11_2701 0.46 +0.4
998,390 + Ac3H11_2701 0.54 +1.3
998,390 + Ac3H11_2701 0.54 -0.4
998,391 - Ac3H11_2701 0.54 +0.2

Or see this region's nucleotide sequence