Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2699

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2698 and Ac3H11_2699 are separated by 105 nucleotidesAc3H11_2699 and Ac3H11_2700 are separated by 15 nucleotides Ac3H11_2698 - hypothetical protein, at 993,384 to 994,802 _2698 Ac3H11_2699 - Transcriptional regulator, MarR family, at 994,908 to 996,443 _2699 Ac3H11_2700 - FIG00575888: hypothetical protein, at 996,459 to 997,400 _2700 Position (kb) 994 995 996 997Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 994.027 kb on + strand, within Ac3H11_2698at 994.027 kb on + strand, within Ac3H11_2698at 994.027 kb on + strand, within Ac3H11_2698at 994.028 kb on - strand, within Ac3H11_2698at 994.087 kb on + strand, within Ac3H11_2698at 994.087 kb on + strand, within Ac3H11_2698at 994.087 kb on + strand, within Ac3H11_2698at 994.366 kb on + strand, within Ac3H11_2698at 994.366 kb on + strand, within Ac3H11_2698at 994.366 kb on + strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.367 kb on - strand, within Ac3H11_2698at 994.424 kb on - strand, within Ac3H11_2698at 994.444 kb on + strand, within Ac3H11_2698at 994.445 kb on - strand, within Ac3H11_2698at 994.445 kb on - strand, within Ac3H11_2698at 994.602 kb on - strand, within Ac3H11_2698at 994.853 kb on + strandat 994.853 kb on + strandat 994.853 kb on + strandat 994.854 kb on - strandat 994.854 kb on - strandat 994.872 kb on + strandat 994.872 kb on + strandat 994.950 kb on + strandat 994.951 kb on - strandat 994.951 kb on - strandat 995.208 kb on + strand, within Ac3H11_2699at 995.315 kb on + strand, within Ac3H11_2699at 995.332 kb on + strand, within Ac3H11_2699at 995.353 kb on + strand, within Ac3H11_2699at 995.440 kb on + strand, within Ac3H11_2699at 995.441 kb on - strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.484 kb on + strand, within Ac3H11_2699at 995.485 kb on - strand, within Ac3H11_2699at 995.485 kb on - strand, within Ac3H11_2699at 995.958 kb on + strand, within Ac3H11_2699at 996.273 kb on - strand, within Ac3H11_2699at 996.273 kb on - strand, within Ac3H11_2699at 996.276 kb on - strand, within Ac3H11_2699at 996.276 kb on - strand, within Ac3H11_2699at 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.439 kb on + strandat 996.440 kb on - strandat 996.440 kb on - strandat 996.440 kb on - strandat 996.440 kb on - strandat 996.527 kb on + strandat 996.528 kb on - strandat 996.583 kb on + strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.584 kb on - strand, within Ac3H11_2700at 996.603 kb on - strand, within Ac3H11_2700at 996.632 kb on + strand, within Ac3H11_2700at 996.633 kb on - strand, within Ac3H11_2700at 996.872 kb on - strand, within Ac3H11_2700at 996.960 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.012 kb on + strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.013 kb on - strand, within Ac3H11_2700at 997.015 kb on + strand, within Ac3H11_2700at 997.312 kb on + strandat 997.313 kb on - strandat 997.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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994,027 + Ac3H11_2698 0.45 +0.4
994,027 + Ac3H11_2698 0.45 +0.7
994,027 + Ac3H11_2698 0.45 +0.4
994,028 - Ac3H11_2698 0.45 +0.9
994,087 + Ac3H11_2698 0.50 -0.5
994,087 + Ac3H11_2698 0.50 +0.4
994,087 + Ac3H11_2698 0.50 -0.2
994,366 + Ac3H11_2698 0.69 -1.4
994,366 + Ac3H11_2698 0.69 +0.1
994,366 + Ac3H11_2698 0.69 +0.5
994,367 - Ac3H11_2698 0.69 +0.4
994,367 - Ac3H11_2698 0.69 +0.4
994,367 - Ac3H11_2698 0.69 +0.5
994,367 - Ac3H11_2698 0.69 +0.7
994,424 - Ac3H11_2698 0.73 -0.2
994,444 + Ac3H11_2698 0.75 +1.3
994,445 - Ac3H11_2698 0.75 +0.2
994,445 - Ac3H11_2698 0.75 +0.8
994,602 - Ac3H11_2698 0.86 -3.4
994,853 + +0.5
994,853 + +0.6
994,853 + -1.4
994,854 - +1.6
994,854 - -0.8
994,872 + -0.5
994,872 + -0.4
994,950 + -0.2
994,951 - -0.0
994,951 - -0.3
995,208 + Ac3H11_2699 0.20 +1.1
995,315 + Ac3H11_2699 0.26 -1.5
995,332 + Ac3H11_2699 0.28 -0.1
995,353 + Ac3H11_2699 0.29 +0.3
995,440 + Ac3H11_2699 0.35 +0.2
995,441 - Ac3H11_2699 0.35 -0.2
995,484 + Ac3H11_2699 0.38 +0.7
995,484 + Ac3H11_2699 0.38 -2.2
995,484 + Ac3H11_2699 0.38 -0.7
995,484 + Ac3H11_2699 0.38 -0.1
995,484 + Ac3H11_2699 0.38 -0.4
995,485 - Ac3H11_2699 0.38 +0.2
995,485 - Ac3H11_2699 0.38 +0.0
995,958 + Ac3H11_2699 0.68 -0.4
996,273 - Ac3H11_2699 0.89 +0.1
996,273 - Ac3H11_2699 0.89 -0.0
996,276 - Ac3H11_2699 0.89 -1.7
996,276 - Ac3H11_2699 0.89 +0.7
996,439 + -1.2
996,439 + +0.2
996,439 + -1.0
996,439 + +0.1
996,439 + -0.4
996,439 + -0.4
996,439 + +0.3
996,439 + +0.8
996,439 + -1.1
996,439 + +0.9
996,439 + +1.0
996,439 + -0.2
996,440 - -0.2
996,440 - +0.0
996,440 - -1.1
996,440 - +0.4
996,527 + -0.2
996,528 - -0.1
996,583 + Ac3H11_2700 0.13 -0.1
996,584 - Ac3H11_2700 0.13 +0.1
996,584 - Ac3H11_2700 0.13 +1.1
996,584 - Ac3H11_2700 0.13 +0.5
996,584 - Ac3H11_2700 0.13 +1.0
996,603 - Ac3H11_2700 0.15 +0.1
996,632 + Ac3H11_2700 0.18 -0.5
996,633 - Ac3H11_2700 0.18 +2.5
996,872 - Ac3H11_2700 0.44 +0.3
996,960 + Ac3H11_2700 0.53 -0.8
997,012 + Ac3H11_2700 0.59 -0.1
997,012 + Ac3H11_2700 0.59 +1.2
997,012 + Ac3H11_2700 0.59 -1.9
997,012 + Ac3H11_2700 0.59 +0.5
997,013 - Ac3H11_2700 0.59 -1.2
997,013 - Ac3H11_2700 0.59 -0.5
997,013 - Ac3H11_2700 0.59 +0.5
997,013 - Ac3H11_2700 0.59 +0.7
997,015 + Ac3H11_2700 0.59 -0.6
997,312 + +0.6
997,313 - +0.2
997,327 - +0.3

Or see this region's nucleotide sequence