Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2344

Experiment: A22 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2342 and Ac3H11_2343 are separated by 33 nucleotidesAc3H11_2343 and Ac3H11_2344 overlap by 23 nucleotidesAc3H11_2344 and Ac3H11_2345 are separated by 66 nucleotides Ac3H11_2342 - miscellaneous; not classified regulator, at 597,868 to 598,734 _2342 Ac3H11_2343 - FIG00978337: hypothetical protein, at 598,768 to 599,256 _2343 Ac3H11_2344 - Transcriptional activator MetR, at 599,234 to 600,160 _2344 Ac3H11_2345 - 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (EC 2.1.1.14), at 600,227 to 602,659 _2345 Position (kb) 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 598.253 kb on + strand, within Ac3H11_2342at 598.253 kb on + strand, within Ac3H11_2342at 598.254 kb on - strand, within Ac3H11_2342at 598.412 kb on + strand, within Ac3H11_2342at 598.413 kb on - strand, within Ac3H11_2342at 598.571 kb on + strand, within Ac3H11_2342at 598.571 kb on + strand, within Ac3H11_2342at 598.571 kb on + strand, within Ac3H11_2342at 598.571 kb on + strand, within Ac3H11_2342at 598.571 kb on + strand, within Ac3H11_2342at 598.712 kb on + strandat 598.712 kb on + strandat 598.712 kb on + strandat 598.713 kb on - strandat 598.721 kb on + strandat 598.730 kb on + strandat 598.730 kb on + strandat 598.731 kb on - strandat 598.734 kb on + strandat 598.734 kb on + strandat 598.734 kb on + strandat 598.734 kb on + strandat 598.734 kb on + strandat 598.735 kb on - strandat 598.735 kb on - strandat 598.735 kb on - strandat 598.735 kb on - strandat 598.735 kb on - strandat 598.735 kb on - strandat 598.745 kb on + strandat 598.745 kb on + strandat 598.745 kb on + strandat 598.745 kb on + strandat 598.745 kb on + strandat 598.746 kb on - strandat 598.746 kb on - strandat 598.749 kb on + strandat 598.750 kb on - strandat 598.858 kb on + strand, within Ac3H11_2343at 598.858 kb on + strand, within Ac3H11_2343at 599.068 kb on + strand, within Ac3H11_2343at 599.069 kb on - strand, within Ac3H11_2343at 599.069 kb on - strand, within Ac3H11_2343at 599.069 kb on - strand, within Ac3H11_2343at 599.179 kb on + strand, within Ac3H11_2343at 599.179 kb on + strand, within Ac3H11_2343at 599.180 kb on - strand, within Ac3H11_2343at 599.180 kb on - strand, within Ac3H11_2343at 599.180 kb on - strand, within Ac3H11_2343at 599.218 kb on + strandat 599.218 kb on + strandat 599.218 kb on + strandat 599.219 kb on - strandat 599.219 kb on - strandat 599.219 kb on - strandat 599.236 kb on - strandat 599.236 kb on - strandat 599.300 kb on + strandat 599.300 kb on + strandat 599.300 kb on + strandat 599.300 kb on + strandat 599.301 kb on - strandat 599.301 kb on - strandat 599.301 kb on - strandat 599.304 kb on + strandat 599.304 kb on + strandat 599.305 kb on - strandat 599.305 kb on - strandat 599.378 kb on - strand, within Ac3H11_2344at 599.378 kb on - strand, within Ac3H11_2344at 599.388 kb on + strand, within Ac3H11_2344at 599.388 kb on + strand, within Ac3H11_2344at 599.403 kb on + strand, within Ac3H11_2344at 599.562 kb on + strand, within Ac3H11_2344at 599.562 kb on + strand, within Ac3H11_2344at 599.563 kb on - strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 599.673 kb on + strand, within Ac3H11_2344at 600.292 kb on - strandat 600.516 kb on + strand, within Ac3H11_2345at 600.516 kb on + strand, within Ac3H11_2345at 600.517 kb on - strand, within Ac3H11_2345at 600.517 kb on - strand, within Ac3H11_2345at 600.593 kb on + strand, within Ac3H11_2345at 600.725 kb on + strand, within Ac3H11_2345at 600.725 kb on + strand, within Ac3H11_2345at 600.726 kb on - strand, within Ac3H11_2345at 600.726 kb on - strand, within Ac3H11_2345at 600.731 kb on + strand, within Ac3H11_2345at 600.731 kb on + strand, within Ac3H11_2345at 600.731 kb on + strand, within Ac3H11_2345at 600.732 kb on - strand, within Ac3H11_2345at 600.929 kb on + strand, within Ac3H11_2345at 601.002 kb on + strand, within Ac3H11_2345at 601.088 kb on + strand, within Ac3H11_2345at 601.088 kb on + strand, within Ac3H11_2345at 601.088 kb on + strand, within Ac3H11_2345at 601.089 kb on - strand, within Ac3H11_2345at 601.089 kb on - strand, within Ac3H11_2345

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.025 mg/ml
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598,253 + Ac3H11_2342 0.44 +0.4
598,253 + Ac3H11_2342 0.44 +0.5
598,254 - Ac3H11_2342 0.45 -1.4
598,412 + Ac3H11_2342 0.63 -1.3
598,413 - Ac3H11_2342 0.63 -0.1
598,571 + Ac3H11_2342 0.81 +0.3
598,571 + Ac3H11_2342 0.81 -1.8
598,571 + Ac3H11_2342 0.81 +0.7
598,571 + Ac3H11_2342 0.81 -0.2
598,571 + Ac3H11_2342 0.81 +0.1
598,712 + +1.0
598,712 + -0.5
598,712 + +0.2
598,713 - -0.4
598,721 + -0.7
598,730 + -2.2
598,730 + +0.5
598,731 - +1.3
598,734 + +0.9
598,734 + -0.6
598,734 + +0.6
598,734 + -0.4
598,734 + +1.4
598,735 - +0.1
598,735 - -0.3
598,735 - +1.0
598,735 - +1.0
598,735 - +0.1
598,735 - -1.1
598,745 + -1.3
598,745 + +0.2
598,745 + -0.3
598,745 + -2.8
598,745 + +0.3
598,746 - -0.6
598,746 - +2.2
598,749 + -0.4
598,750 - -1.0
598,858 + Ac3H11_2343 0.18 +1.1
598,858 + Ac3H11_2343 0.18 +1.7
599,068 + Ac3H11_2343 0.61 -0.2
599,069 - Ac3H11_2343 0.62 -0.3
599,069 - Ac3H11_2343 0.62 +0.8
599,069 - Ac3H11_2343 0.62 -0.5
599,179 + Ac3H11_2343 0.84 -1.6
599,179 + Ac3H11_2343 0.84 +0.4
599,180 - Ac3H11_2343 0.84 +0.6
599,180 - Ac3H11_2343 0.84 -1.1
599,180 - Ac3H11_2343 0.84 +0.1
599,218 + +1.9
599,218 + +0.6
599,218 + +1.3
599,219 - +0.5
599,219 - +0.1
599,219 - +0.1
599,236 - -0.1
599,236 - -0.4
599,300 + -1.1
599,300 + -1.0
599,300 + +1.1
599,300 + -0.6
599,301 - -2.5
599,301 - -0.4
599,301 - -2.2
599,304 + -1.4
599,304 + -1.0
599,305 - -2.7
599,305 - +0.3
599,378 - Ac3H11_2344 0.16 +0.0
599,378 - Ac3H11_2344 0.16 +1.4
599,388 + Ac3H11_2344 0.17 -0.6
599,388 + Ac3H11_2344 0.17 -1.1
599,403 + Ac3H11_2344 0.18 -1.4
599,562 + Ac3H11_2344 0.35 -1.0
599,562 + Ac3H11_2344 0.35 -1.3
599,563 - Ac3H11_2344 0.35 -1.8
599,673 + Ac3H11_2344 0.47 -0.4
599,673 + Ac3H11_2344 0.47 -0.6
599,673 + Ac3H11_2344 0.47 -0.2
599,673 + Ac3H11_2344 0.47 -0.1
600,292 - -0.6
600,516 + Ac3H11_2345 0.12 -0.5
600,516 + Ac3H11_2345 0.12 -2.4
600,517 - Ac3H11_2345 0.12 +1.2
600,517 - Ac3H11_2345 0.12 -3.0
600,593 + Ac3H11_2345 0.15 -0.1
600,725 + Ac3H11_2345 0.20 +0.4
600,725 + Ac3H11_2345 0.20 -1.5
600,726 - Ac3H11_2345 0.21 -0.1
600,726 - Ac3H11_2345 0.21 -1.2
600,731 + Ac3H11_2345 0.21 -0.8
600,731 + Ac3H11_2345 0.21 +0.3
600,731 + Ac3H11_2345 0.21 -0.0
600,732 - Ac3H11_2345 0.21 -1.5
600,929 + Ac3H11_2345 0.29 +0.2
601,002 + Ac3H11_2345 0.32 -1.1
601,088 + Ac3H11_2345 0.35 -0.4
601,088 + Ac3H11_2345 0.35 -0.7
601,088 + Ac3H11_2345 0.35 -2.7
601,089 - Ac3H11_2345 0.35 -2.1
601,089 - Ac3H11_2345 0.35 -1.6

Or see this region's nucleotide sequence